1XG7 | pdb_00001xg7

Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus

• PDB DOI: https://doi.org/10.2210/pdb1XG7/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Pyrococcus furiosus DSM 3638
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-09-16 Released: 2004-11-23 
• Deposition Author(s): Chang, J., Zhao, M., Horanyi, P., Xu, H., Yang, H., Liu, Z.-J., Chen, L., Zhou, W., Habel, J., Tempel, W., Lee, D., Lin, D., Chang, S.-H., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Lee, H.-S., Li, T., Poole II, F.L., Shah, C., Sugar, F.J., Chen, C.-Y., Arendall III, W.B., Richardson, J.S., Richardson, D.C., Rose, J.P., Adams, M.W.W., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free: 
  0.261 (Depositor), 0.266 (DCC) 
• R-Value Work: 
  0.207 (Depositor), 0.217 (DCC) 
• R-Value Observed: 
  0.210 (Depositor) 

Literature

Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus

Chang, J., Zhao, M., Horanyi, P., Xu, H., Yang, H., Liu, Z.-J., Chen, L., Zhou, W., Habel, J., Tempel, W., Lee, D., Lin, D., Chang, S.-H., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Lee, H.-S., Li, T., Poole II, F.L., Shah, C., Sugar, F.J., CHEN, C.-Y., Arendall III, W.B., Richardson, J.S., Richardson, D.C., Rose, J.P., ADAMS, M.W.W., Wang, B.-C., Southeast Collaboratory for Structural Genomics

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 58.6 kDa 
• Atom Count: 4,016 
• Modeled Residue Count: 484 
• Deposited Residue Count: 500 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein	A, B	250	Pyrococcus furiosus DSM 3638	Mutation(s): 0  EC: 4.2.99.18 (UniProt), 3.2.2 (UniProt)
UniProt
Find proteins for Q8U2D5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U2D5  Go to UniProtKB:  Q8U2D5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.88 Å
• R-Value Free:  0.261 (Depositor), 0.266 (DCC) 
• R-Value Work:  0.207 (Depositor), 0.217 (DCC) 
• R-Value Observed: 0.210 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.688	α = 90
b = 81.639	β = 90
c = 90.581	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-23 
Deposition Author(s): Chang, J., Zhao, M., Horanyi, P., Xu, H., Yang, H., Liu, Z.-J., Chen, L., Zhou, W., Habel, J., Tempel, W., Lee, D., Lin, D., Chang, S.-H., Eneh, J.C., Hopkins, R.C., Jenney Jr., F.E., Lee, H.-S., Li, T., Poole II, F.L., Shah, C., Sugar, F.J., Chen, C.-Y., Arendall III, W.B., Richardson, J.S., Richardson, D.C., Rose, J.P., Adams, M.W.W., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History  

• Version 1.0: 2004-11-23
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references, Refinement description