1X6O | pdb_00001x6o

Structural Analysis of Leishmania braziliensis eukaryotic initiation factor 5a

PDB DOI: https://doi.org/10.2210/pdb1X6O/pdb

Classification: TRANSLATION
Organism(s): Leishmania braziliensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-08-11 Released: 2004-08-24
Deposition Author(s): Bosch, J., Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.214 (Depositor), 0.216 (DCC)
R-Value Work:
0.174 (Depositor), 0.176 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history.

Literature

Structural Analysis of Leishmania braziliensis eukaryotic initiation factor 5a

Bosch, J., Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium

To be published.

Macromolecule Content

Total Structure Weight: 18.97 kDa
Atom Count: 1,402
Modeled Residue Count: 143
Deposited Residue Count: 174
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
eukaryotic initiation factor 5a	A	174	Leishmania braziliensis	Mutation(s): 0
UniProt
Find proteins for A4HE05 (Leishmania braziliensis) Explore A4HE05 Go to UniProtKB: A4HE05
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A4HE05
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.214 (Depositor), 0.216 (DCC)
R-Value Work: 0.174 (Depositor), 0.176 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.991	α = 90
b = 64.991	β = 90
c = 88.297	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
SHARP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-08-24

Deposition Author(s):

Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History (Full details and data files)

Version 1.0: 2004-08-24
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2018-01-31
Changes: Database references
Version 1.4: 2024-02-14
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.