1WUG | pdb_00001wug

complex structure of PCAF bromodomain with small chemical ligand NP1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 1WUG

This is version 1.4 of the entry. See complete history

Literature

Selective small molecules blocking HIV-1 Tat and coactivator PCAF association

Zeng, L.Li, J.Muller, M.Yan, S.Mujtaba, S.Pan, C.Wang, Z.Zhou, M.M.

(2005) J Am Chem Soc 127: 2376-2377

  • DOI: https://doi.org/10.1021/ja044885g
  • Primary Citation Related Structures: 
    1WUG, 1WUM

  • PubMed Abstract: 

    Development of drug resistance from mutations in the targeted viral proteins leads to continuation of viral production by chronically infected cells, contributing to HIV-mediated immune dysfunction. Targeting a host cell protein essential for viral reproduction, rather than a viral protein, may minimize the viral drug resistance problem as observed with HIV protease inhibitors. We report here the development of a novel class of N1-aryl-propane-1,3-diamine compounds using a structure-based approach that selectively inhibit the activity of the bromodomain of the human transcriptional co-activator PCAF, of which association with the HIV trans-activator Tat is essential for transcription and replication of the integrated HIV provirus.


  • Organizational Affiliation
    • Structural Biology Program, Department of Physiology and Biophysics, Mount Sinai School of Medicine, New York University, One Gustave L. Levy Place, New York, New York 10029-6574, USA.

Macromolecule Content 

  • Total Structure Weight: 14.26 kDa 
  • Atom Count: 1,002 
  • Modeled Residue Count: 118 
  • Deposited Residue Count: 118 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Histone acetyltransferase PCAF118Homo sapiensMutation(s): 0 
Gene Names: PCAF
EC: 2.3.1.48 (PDB Primary Data), 2.3.1.57 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q92831 (Homo sapiens)
Explore Q92831 
Go to UniProtKB:  Q92831
PHAROS:  Q92831
GTEx:  ENSG00000114166 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92831
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NP1

Query on NP1



Download:Ideal Coordinates CCD File
B [auth A]N-(3-AMINOPROPYL)-4-METHYL-2-NITROBENZENAMINE
C10 H15 N3 O2
FKZUPMCBVURANR-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
NP1 BindingDB:  1WUG IC50: min: 1600, max: 5000 (nM) from 2 assay(s)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-08-16
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-05-29
    Changes: Data collection