1WN4 | pdb_00001wn4

NMR Structure of VoNTR


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1WN4

This is version 1.4 of the entry. See complete history

Literature

Conserved structural and sequence elements implicated in the processing of gene-encoded circular proteins

Dutton, J.L.Renda, R.F.Waine, C.Clark, R.J.Daly, N.L.Jennings, C.V.Anderson, M.A.Craik, D.J.

(2004) J Biological Chem 279: 46858-46867

  • DOI: https://doi.org/10.1074/jbc.M407421200
  • Primary Citation Related Structures: 
    1WN4, 1WN8

  • PubMed Abstract: 

    The cyclotides are the largest family of naturally occurring circular proteins. The mechanism by which the termini of these gene-encoded proteins are linked seamlessly with a peptide bond to form a circular backbone is unknown. Here we report cyclotide-encoding cDNA sequences from the plant Viola odorata and compare them with those from an evolutionarily distinct species, Oldenlandia affinis. Individual members of this multigene family encode one to three mature cyclotide domains. These domains are preceded by N-terminal repeat regions (NTRs) that are conserved within a plant species but not between species. We have structurally characterized peptides corresponding to these NTRs and show that, despite them having no sequence homology, they form a structurally conserved alpha-helical motif. This structural conservation suggests a vital role for the NTR in the in vivo folding, processing, or detoxification of cyclotide domains from the precursor protein.


  • Organizational Affiliation
    • Institute for Molecular Bioscience, University of Queensland, Brisbane, Quuensland 4072, Australia.

Macromolecule Content 

  • Total Structure Weight: 2.96 kDa 
  • Atom Count: 209 
  • Modeled Residue Count: 28 
  • Deposited Residue Count: 28 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
VoNTR protein28N/AMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q5USN7 (Viola odorata)
Explore Q5USN7 
Go to UniProtKB:  Q5USN7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5USN7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-09-14
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-29
    Changes: Data collection