1W3E | pdb_00001w3e

Ribosomal L30e of Thermococcus celer, P59A mutant

PDB DOI: https://doi.org/10.2210/pdb1W3E/pdb

Classification: RIBOSOMAL PROTEIN
Organism(s): Thermococcus celer
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2004-07-15 Released: 2006-10-19
Deposition Author(s): Ma, H.W., Lee, C.F., Allen, M.D., Bycroft, M., Wong, K.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free:
0.248 (Depositor), 0.249 (DCC)
R-Value Work:
0.190 (Depositor), 0.198 (DCC)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Role of Proline Residues in Thermostability of T. Celer L30E Protein

Ma, H.W., Lee, C.F., Allen, M.D., Bycroft, M., Wong, K.B.

To be published.

Macromolecule Content

Total Structure Weight: 10.96 kDa
Atom Count: 834
Modeled Residue Count: 99
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S RIBOSOMAL PROTEIN L30E	A [auth X]	101	Thermococcus celer	Mutation(s): 1
UniProt
Find proteins for P29160 (Thermococcus celer) Explore P29160 Go to UniProtKB: P29160
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P29160
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.77 Å
R-Value Free: 0.248 (Depositor), 0.249 (DCC)
R-Value Work: 0.190 (Depositor), 0.198 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 23.194	α = 90
b = 53.802	β = 109.36
c = 34.174	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2006-10-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-10-19
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.