1VTU | pdb_00001vtu

Structural characteristics of enantiomorphic DNA: Crystal analysis of racemates of the D(CGCGCG) duplex

• PDB DOI: https://doi.org/10.2210/pdb1VTU/pdb
• NAKB: 1VTU

• Classification: DNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 1994-08-29 Released: 2011-07-13 
• Deposition Author(s): Doi, M., Inoue, M., Tomoo, K., Ishida, T., Ueda, Y., Akagi, M., Urata, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Work: 
  0.199 (Depositor) 
• R-Value Observed: 
  0.199 (Depositor) 

Literature

Structural Characteristics of Enantiomorphic DNA: Crystal Analysis of Racemates of the d(CGCGCG) Duplex

Doi, M., Inoue, M., Tomoo, K., Ishida, T., Ueda, Y., Akagi, M., Urata, H.

(1993) J Am Chem Soc 115: 10432-10433

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3.62 kDa 
• Atom Count: 278 
• Modeled Residue Count: 12 
• Deposited Residue Count: 12 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')	A, B	6	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Work:  0.199 (Depositor) 
• R-Value Observed: 0.199 (Depositor) 

Space Group: P -1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.302	α = 72.96
b = 23.215	β = 90.6
c = 23.184	γ = 90.6

Software Package:

Software Name	Purpose
X-PLOR	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-07-13 
Deposition Author(s): Doi, M., Inoue, M., Tomoo, K., Ishida, T., Ueda, Y., Akagi, M., Urata, H.

Revision History  

• Version 1.0: 2011-07-13
  Type: Initial release
  
• Version 1.1: 2012-03-28
  Changes: Other
• Version 1.2: 2020-06-24
  Changes: Database references, Source and taxonomy
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references