1VE2 | pdb_00001ve2

Crystal structure of uroporphyrin-III-C-methyltransferase from thermus thermophilus

PDB DOI: https://doi.org/10.2210/pdb1VE2/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-03-26 Released: 2005-04-12
Deposition Author(s): Jeyakanthan, J., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.241 (Depositor), 0.241 (DCC)
R-Value Work:
0.207 (Depositor), 0.207 (DCC)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1VE2

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Uroporphyrin-III-C-Methyltrans from Thermus Thermophilus

Jeyakanthan, J., Tahirov, T.H.

To be published.

Macromolecule Content

Total Structure Weight: 49.11 kDa
Atom Count: 3,695
Modeled Residue Count: 442
Deposited Residue Count: 470
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uroporphyrin-III C-methyltransferase	A, B	235	Thermus thermophilus	Mutation(s): 0 EC: 2.1.1.107
UniProt
Find proteins for Q53WA2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q53WA2 Go to UniProtKB: Q53WA2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q53WA2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.241 (Depositor), 0.241 (DCC)
R-Value Work: 0.207 (Depositor), 0.207 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.609	α = 90
b = 87.924	β = 90
c = 91.602	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-04-12

Deposition Author(s):

Jeyakanthan, J.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2005-04-12
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.