1UV0 | pdb_00001uv0

Pancreatitis-associated protein 1 from human

• PDB DOI: https://doi.org/10.2210/pdb1UV0/pdb

• Classification: SUGAR BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Mus musculus
• Mutation(s): No 


• Deposited: 2004-01-12 Released: 2004-01-14 
• Deposition Author(s): Abergel, C., Shepard, W., Christal, L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 
  0.244 (Depositor), 0.241 (DCC) 
• R-Value Work: 
  0.188 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.188 (Depositor) 

Starting Model: experimental

Literature

Crystallization and preliminary crystallographic study of HIP/PAP, a human C-lectin overexpressed in primary liver cancers.

Abergel, C., Chenivesse, S., Stinnakre, M.G., Guasco, S., Brechot, C., Claverie, J.M., Devinoy, E., Christa, L.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1487-1489

• PubMed: 10417404 
• DOI: https://doi.org/10.1107/s0907444999007969
• Primary Citation Related Structures: 
  1UV0


• PubMed Abstract: 
  

  Human HIP/PAP is an adhesion protein expressed in normal pancreatic and Paneth cells and overexpressed in hepatocellular carcinoma. HIP/PAP was crystallized using the Hampton Research Crystal Screen and SAmBA software to define the optimal crystallization protocol. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 30.73, b = 49.35, c = 92.15 A and one molecule in the asymmetric unit. Flash-frozen crystals diffract to 1. 78 A resolution using synchrotron radiation. A molecular-replacement solution was obtained using the human Reg/lithostathine structure and the AMoRe software.

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Organizational Affiliation: 
• Information Génétique et Structurale, CNRS UMR 1889, Institut de Biologie Structurale et Microbiologie, 31 Chemin Joseph Aiguier, 13402 Marseille CEDEX 20, France. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 16.78 kDa 
• Atom Count: 1,243 
• Modeled Residue Count: 138 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PANCREATITIS-ASSOCIATED PROTEIN 1	A	149	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q06141 (Homo sapiens) Explore Q06141  Go to UniProtKB:  Q06141
PHAROS:  Q06141 GTEx:  ENSG00000172016

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A], D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free:  0.244 (Depositor), 0.241 (DCC) 
• R-Value Work:  0.188 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.188 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 30.73	α = 90
b = 49.35	β = 90
c = 92.15	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-01-14 
Deposition Author(s): Abergel, C., Shepard, W., Christal, L.

Revision History  

• Version 1.0: 2004-01-14
  Type: Initial release
  
• Version 1.1: 2014-02-05
  Changes: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance
• Version 1.2: 2019-10-09
  Changes: Data collection, Database references, Other
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2024-11-20
  Changes: Structure summary