1UUF | pdb_00001uuf

crystal structure of a zinc-type alcohol dehydrogenase-like protein yahK

PDB DOI: https://doi.org/10.2210/pdb1UUF/pdb

Classification: OXIDOREDUCTASE
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2003-12-18 Released: 2004-01-29
Deposition Author(s): Jeudy, S., Claverie, J.M., Abergel, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free:
0.208 (Depositor), 0.202 (DCC)
R-Value Work:
0.184 (Depositor), 0.178 (DCC)
R-Value Observed:
0.184 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1UUF

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of a Yahk, a Zinc-Type Alcohol Dehydrogenase-Like Protein

Jeudy, S., Claverie, J.M., Abergel, C.

To be published.

Macromolecule Content

Total Structure Weight: 40.56 kDa
Atom Count: 2,960
Modeled Residue Count: 340
Deposited Residue Count: 369
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN YAHK	A	369	Escherichia coli K-12	Mutation(s): 0 EC: 1.1.1.2
UniProt
Find proteins for P75691 (Escherichia coli (strain K12)) Explore P75691 Go to UniProtKB: P75691
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P75691
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free: 0.208 (Depositor), 0.202 (DCC)
R-Value Work: 0.184 (Depositor), 0.178 (DCC)
R-Value Observed: 0.184 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.536	α = 90
b = 78.805	β = 109.6
c = 70.685	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling
autoSHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-01-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-01-29
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-05-08
Changes: Data collection, Database references, Derived calculations, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.