1ULR | pdb_00001ulr

Crystal structure of tt0497 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb1ULR/pdb

Classification: HYDROLASE
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-09-16 Released: 2004-11-02
Deposition Author(s): Ago, H., Hamada, K., Sugahara, M., Kuroishi, C., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.216 (Depositor), 0.217 (DCC)
R-Value Work:
0.187 (Depositor), 0.188 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 1ULR

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of tt0497 from Thermus thermophilus HB8

Ago, H., Hamada, K., Sugahara, M., Kuroishi, C., Kuramitsu, S., Yokoyama, S., Miyano, M.

To be published.

Macromolecule Content

Total Structure Weight: 9.69 kDa
Atom Count: 828
Modeled Residue Count: 87
Deposited Residue Count: 88
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative acylphosphatase	A	88	Thermus thermophilus	Mutation(s): 0 EC: 3.6.1.7
UniProt
Find proteins for Q5SKS6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SKS6 Go to UniProtKB: Q5SKS6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SKS6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.216 (Depositor), 0.217 (DCC)
R-Value Work: 0.187 (Depositor), 0.188 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.911	α = 90
b = 45.727	β = 90
c = 49.958	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data reduction
CrystalClear	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-11-02

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-11-02
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.