1UFY | pdb_00001ufy

Crystal analysis of chorismate mutase from thermus thermophilus

• PDB DOI: https://doi.org/10.2210/pdb1UFY/pdb

• Classification: ISOMERASE
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-06-11 Released: 2003-07-01 
• Deposition Author(s): Inagaki, E., Miyano, M., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 0.96 Å
• R-Value Free: 
  0.127 (Depositor), 0.128 (DCC) 
• R-Value Work: 
  0.110 (Depositor), 0.126 (DCC) 
• R-Value Observed: 
  0.110 (Depositor) 

Starting Model: experimental

Literature

The Crystal Structure of Chorismate Mutase from Thermus Thermophilus

Inagaki, E., Kuramitsu, S., Yokoyama, S., Miyano, M., Tahirov, T.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 14.59 kDa 
• Atom Count: 1,143 
• Modeled Residue Count: 121 
• Deposited Residue Count: 122 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chorismate mutase	A	122	Thermus thermophilus HB8	Mutation(s): 0  EC: 5.4.99.5
UniProt
Find proteins for Q84FH6 (Thermus thermophilus) Explore Q84FH6  Go to UniProtKB:  Q84FH6

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MES	D [auth A], E [auth A], F [auth A], G [auth A]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N
MLI	C [auth A]	MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L
CL	B [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 0.96 Å
• R-Value Free:  0.127 (Depositor), 0.128 (DCC) 
• R-Value Work:  0.110 (Depositor), 0.126 (DCC) 
• R-Value Observed: 0.110 (Depositor) 

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.252	α = 90
b = 71.252	β = 90
c = 152.36	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
CNS	refinement
SHELXL-97	refinement
HKL-2000	data reduction
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-07-01 
Deposition Author(s): Inagaki, E., Miyano, M., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2003-07-01
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description