1UFA | pdb_00001ufa

Crystal structure of TT1467 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb1UFA/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-05-28 Released: 2003-11-28
Deposition Author(s): Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.238 (Depositor)
R-Value Work:
0.187 (Depositor)
R-Value Observed:
0.187 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1UFA

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of TT1467 from Thermus thermophilus HB8

Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 59.63 kDa
Atom Count: 4,412
Modeled Residue Count: 509
Deposited Residue Count: 520
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TT1467 protein	A	520	Thermus thermophilus	Mutation(s): 0 EC: 2.4.1.18
UniProt
Find proteins for Q5SH28 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SH28 Go to UniProtKB: Q5SH28
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SH28
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.238 (Depositor)
R-Value Work: 0.187 (Depositor)
R-Value Observed: 0.187 (Depositor)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.376	α = 90
b = 119.376	β = 90
c = 73.898	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
autoSHARP	phasing
CCP4	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2003-11-28

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2003-11-28
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description
Version 1.4: 2023-12-27
Changes: Data collection, Database references, Derived calculations
Version 1.5: 2024-11-20
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.