1UDD | pdb_00001udd

TenA homologue protein from P.horikoshii OT3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 
    0.246 (Depositor), 0.215 (DCC) 
  • R-Value Work: 
    0.218 (Depositor), 0.219 (DCC) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii.

Itou, H.Yao, M.Watanabe, N.Tanaka, I.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1094-1100

  • DOI: https://doi.org/10.1107/S0907444904008522
  • Primary Citation Related Structures: 
    1UDD

  • PubMed Abstract: 

    The crystal structure of the Bacillus subtilis TenA-homologue protein PH1161 from the hyperthermophilic archaebacterium Pyrococcus horikoshii was determined. TenA is known to belong to a new family of activators that stimulate the production of extracellular proteases in B. subtilis. A sequence-similarity search revealed that TenA-homologue proteins are widespread in bacteria and archaea, suggesting that this family of proteins plays an essential role in these organisms. In the present study, the first three-dimensional structure of a member of the TenA family of proteins was determined, unexpectedly revealing that the protein has a fold identical to that of haem oxygenase-1. Analysis has also shown that the protein has a unique ligand-binding pocket. Electron density of a bound ligand molecule was observed in this pocket. These results provide a valuable insight into the functional understanding of the TenA family of proteins.


  • Organizational Affiliation
    • Frontier Research Center for Post-genomic Science and Technology, Hokkaido University, Sapporo 001-0021, Japan.

Macromolecule Content 

  • Total Structure Weight: 106.48 kDa 
  • Atom Count: 7,221 
  • Modeled Residue Count: 856 
  • Deposited Residue Count: 904 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
transcriptional regulator
A, B, C, D
226Pyrococcus horikoshii OT3Mutation(s): 0 
UniProt
Find proteins for O58873 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3))
Explore O58873 
Go to UniProtKB:  O58873
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO58873
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free:  0.246 (Depositor), 0.215 (DCC) 
  • R-Value Work:  0.218 (Depositor), 0.219 (DCC) 
Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.8α = 90
b = 116.8β = 90
c = 70.97γ = 120
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing
CNSrefinement
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-06-01
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2023-12-27
    Changes: Data collection, Database references