1U97 | pdb_00001u97

Solution Structure of Apo Yeast Cox17


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest retraint energies, restraint violations, and RMS deviations from ideal 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Yeast cox17 solution structure and Copper(I) binding.

Abajian, C.Yatsunyk, L.A.Ramirez, B.E.Rosenzweig, A.C.

(2004) J Biological Chem 279: 53584-53592

  • DOI: https://doi.org/10.1074/jbc.M408099200
  • Primary Citation Related Structures: 
    1U96, 1U97

  • PubMed Abstract: 

    Cox17 is a 69-residue cysteine-rich, copper-binding protein that has been implicated in the delivery of copper to the Cu(A) and Cu(B) centers of cytochrome c oxidase via the copper-binding proteins Sco1 and Cox11, respectively. According to isothermal titration calorimetry experiments, fully reduced Cox17 binds one Cu(I) ion with a K(a) of (6.15 +/- 5.83) x 10(6) M(-1). The solution structures of both apo and Cu(I)-loaded Cox17 reveal two alpha helices preceded by an extensive, unstructured N-terminal region. This region is reminiscent of intrinsically unfolded proteins. The two structures are very similar overall with residues in the copper-binding region becoming more ordered in Cu(I)-loaded Cox17. Based on the NMR data, the Cu(I) ion has been modeled as two-coordinate with ligation by conserved residues Cys(23) and Cys(26). This site is similar to those observed for the Atx1 family of copper chaperones and is consistent with reported mutagenesis studies. A number of conserved, positively charged residues may interact with complementary surfaces on Sco1 and Cox11, facilitating docking and copper transfer. Taken together, these data suggest that Cox17 is not only well suited to a copper chaperone function but is specifically designed to interact with two different target proteins.


  • Organizational Affiliation
    • Department of Biochemistry, Northwestern University, Evanston, IL 60208, USA.

Macromolecule Content 

  • Total Structure Weight: 8.07 kDa 
  • Atom Count: 557 
  • Modeled Residue Count: 69 
  • Deposited Residue Count: 69 
  • Unique protein chains: 1

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cytochrome c oxidase copper chaperone69Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: COX17
UniProt
Find proteins for Q12287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12287 
Go to UniProtKB:  Q12287
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12287
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 20 
  • Selection Criteria: lowest retraint energies, restraint violations, and RMS deviations from ideal 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-10-05
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection