1TNV | pdb_00001tnv

CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.00 Å
  • R-Value Work: 
    0.380 (DCC) 

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This is version 1.3 of the entry. See complete history

Literature

Crystal structural analysis of tobacco necrosis virus at 5 A resolution.

Bando, M.Morimoto, Y.Sato, T.Tsukihara, T.

(1994) Acta Crystallogr D Biol Crystallogr 50: 878-883

  • DOI: https://doi.org/10.1107/S0907444994002787
  • Primary Citation Related Structures: 
    1TNV

  • PubMed Abstract: 

    X-ray diffraction intensities for tobacco necrosis virus crystals were collected at 5 A resolution using a Weissenberg camera with a large cassette of radius 430 mm. The synchrotron radiation source at the Photon Factory was used. The crystal structure of the virus was obtained by 91 cycles of the non-crystallographic symmetry averaging. Secondary structures such as alpha-helices and beta-structures were clearly identified in the electron-density map at 5 A resolution. This virus resembles southern bean mosaic virus both in orientation of coat protein subunits and in their folding. Ordered and disordered parts of each subunit of tobacco necrosis virus are shorter and longer than the corresponding parts of the southern bean mosaic virus by 12 and 27 residues, respectively.


  • Organizational Affiliation
    • Department of Biological Science and Technology, Faculty of Engineering, The University of Tokushima, Japan.

Macromolecule Content 

  • Total Structure Weight: 49.58 kDa 
  • Atom Count: 2,328 
  • Modeled Residue Count: 582 
  • Deposited Residue Count: 582 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TOBACCO NECROSIS VIRUS (SUBUNIT VP1)
A, B
186unidentified tobacco necrosis virusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TOBACCO NECROSIS VIRUS (SUBUNIT VP3)210unidentified tobacco necrosis virusMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.00 Å
  • R-Value Work:  0.380 (DCC) 
Space Group: P 42 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 338α = 90
b = 338β = 90
c = 338γ = 90
Software Package:
Software NamePurpose
NCSrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-12-20
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Database references, Derived calculations, Other