1TCZ

Crystal structure of a truncated version of the phage lamda protein gpD

PDB DOI: https://doi.org/10.2210/pdb1TCZ/pdb

Classification: VIRAL PROTEIN
Organism(s): Lambdavirus lambda
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-05-21 Released: 2004-06-15
Deposition Author(s): Chang, C., Plueckthun, A., Wlodawer, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.232
R-Value Work: 0.191
R-Value Observed: 0.191

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a truncated version of the phage lambda protein gpD.

Chang, C., Plueckthun, A., Wlodawer, A.

(2004) Proteins 57: 866-868

PubMed: 15317025 Search on PubMed
DOI: https://doi.org/10.1002/prot.20254
Primary Citation of Related Structures:
1TCZ

Organizational Affiliation

Macromolecular Crystallography Laboratory, National Cancer Institute at Frederick, Frederick, Maryland 21702, USA.

Macromolecule Content

Total Structure Weight: 58.98 kDa
Atom Count: 4,831
Modelled Residue Count: 570
Deposited Residue Count: 570
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Head decoration protein	A, B, C, D, E A, B, C, D, E, F	95	Lambdavirus lambda	Mutation(s): 0 Gene Names: D
UniProt
Find proteins for P03712 (Escherichia phage lambda) Explore P03712 Go to UniProtKB: P03712
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03712
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.232
R-Value Work: 0.191
R-Value Observed: 0.191
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.186	α = 90
b = 99.044	β = 119
c = 59.321	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-06-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-06-15
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-23
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.