1T6E | pdb_00001t6e

Crystal Structure of the Triticum aestivum xylanase inhibitor I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 
    0.214 (Depositor), 0.222 (DCC) 
  • R-Value Work: 
    0.182 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 
    0.185 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1T6E

This is version 1.3 of the entry. See complete history

Literature

Structural basis for inhibition of Aspergillus niger xylanase by triticum aestivum xylanase inhibitor-I

Sansen, S.De Ranter, C.J.Gebruers, K.Brijs, K.Courtin, C.M.Delcour, J.A.Rabijns, A.

(2004) J Biological Chem 279: 36022-36028

  • DOI: https://doi.org/10.1074/jbc.M404212200
  • Primary Citation Related Structures: 
    1T6E, 1T6G

  • PubMed Abstract: 

    Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. The structure of Triticum aestivum xylanase inhibitor-I (TAXI-I), a first member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases, has been determined to 1.7-A resolution. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytical triad are absent. The structure of the TAXI-I. Aspergillus niger xylanase I complex, at a resolution of 1.8 A, illustrates the ability of tight binding and inhibition with subnanomolar affinity and indicates the importance of the C-terminal end for the differences in xylanase specificity among different TAXI-type inhibitors.


  • Organizational Affiliation
    • Laboratory of Analytical Chemistry and Medicinal Physicochemistry, Katholieke Universiteit Leuven, E. van Evenstraat 4, B-3000 Leuven, Belgium.

Macromolecule Content 

  • Total Structure Weight: 38.95 kDa 
  • Atom Count: 2,919 
  • Modeled Residue Count: 362 
  • Deposited Residue Count: 381 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
xylanase inhibitorA [auth X]381Triticum aestivumMutation(s): 0 
EC: 3.2.1.8
UniProt
Find proteins for Q8H0K8 (Triticum aestivum)
Explore Q8H0K8 
Go to UniProtKB:  Q8H0K8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8H0K8
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL

Query on GOL



Download:Ideal Coordinates CCD File
B [auth X]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free:  0.214 (Depositor), 0.222 (DCC) 
  • R-Value Work:  0.182 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 0.185 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.259α = 90
b = 66.722β = 90
c = 106.063γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-09-28
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.3: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Structure summary