1T0T | pdb_00001t0t

Crystallographic structure of a putative chlorite dismutase

• PDB DOI: https://doi.org/10.2210/pdb1T0T/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Geobacillus stearothermophilus
• Mutation(s): No 


• Deposited: 2004-04-12 Released: 2004-08-24 
• Deposition Author(s): Gilski, M., Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.194 (Depositor) 
• R-Value Work: 
  0.156 (Depositor) 
• R-Value Observed: 
  0.158 (Depositor) 

Literature

Crystal Structure of APC35880 protein from Bacillus Stearothermophilus

Gilski, M., Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C5  (Explore in 3D)
Global Stoichiometry: Homo 5-mer - A5 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 145.84 kDa 
• Atom Count: 11,420 
• Modeled Residue Count: 1,215 
• Deposited Residue Count: 1,240 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
APC35880	A [auth V], B [auth W], C [auth X], D [auth Y], E [auth Z]	248	Geobacillus stearothermophilus	Mutation(s): 0  EC: 1.3.98.5
UniProt
Find proteins for Q5KUD5 (Geobacillus kaustophilus (strain HTA426)) Explore Q5KUD5  Go to UniProtKB:  Q5KUD5

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P33	G [auth V], I [auth W], K [auth X], M [auth Y], O [auth Z]	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N
MG	F [auth V], H [auth W], J [auth X], L [auth Y], N [auth Z]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.194 (Depositor) 
• R-Value Work:  0.156 (Depositor) 
• R-Value Observed: 0.158 (Depositor) 

Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 202.839	α = 90
b = 202.839	β = 90
c = 202.839	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-08-24 
Deposition Author(s): Gilski, M., Borek, D., Chen, Y., Collart, F., Joachimiak, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2004-08-24
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-09-13
  Changes: Refinement description
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references, Derived calculations, Structure summary