1SBY | pdb_00001sby

Alcohol dehydrogenase from Drosophila lebanonensis complexed with NAD+ and 2,2,2-trifluoroethanol at 1.1 A resolution

• PDB DOI: https://doi.org/10.2210/pdb1SBY/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Scaptodrosophila lebanonensis
• Mutation(s): No 


• Deposited: 2004-02-11 Released: 2005-02-22 
• Deposition Author(s): Benach, J., Meijers, R., Atrian, S., Gonzalez-Duarte, R., Lamzin, V.S., Ladenstein, R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.10 Å
• R-Value Free: 
  0.172 (Depositor), 0.174 (DCC) 
• R-Value Work: 
  0.141 (DCC) 
• R-Value Observed: 
  0.132 (Depositor) 

Starting Model: experimental

Literature

1.1-A crystal structure of D. lebanonensis ADH complexed with NAD+ and 2,2,2-trifluoroethanol

Benach, J., Meijers, R., Atrian, S., Gonzalez-Duarte, R., Lamzin, V.S., Ladenstein, R.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 57.17 kDa 
• Atom Count: 4,982 
• Modeled Residue Count: 508 
• Deposited Residue Count: 508 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alcohol dehydrogenase	A, B	254	Scaptodrosophila lebanonensis	Mutation(s): 0  EC: 1.1.1.1
UniProt
Find proteins for P10807 (Drosophila lebanonensis) Explore P10807  Go to UniProtKB:  P10807

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	C [auth A], E [auth B]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
ETF	D [auth A], F [auth B]	TRIFLUOROETHANOL C2 H3 F3 O RHQDFWAXVIIEBN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.10 Å
• R-Value Free:  0.172 (Depositor), 0.174 (DCC) 
• R-Value Work:  0.141 (DCC) 
• R-Value Observed: 0.132 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.3	α = 90
b = 52.73	β = 107.34
c = 69.92	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
AMoRE	phasing
SHELXL-97	refinement
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-02-22 
Deposition Author(s): Benach, J., Meijers, R., Atrian, S., Gonzalez-Duarte, R., Lamzin, V.S., Ladenstein, R.

Revision History  

• Version 1.0: 2005-02-22
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-23
  Changes: Data collection, Database references, Derived calculations, Refinement description