1S6Y | pdb_00001s6y

2.3A crystal structure of phospho-beta-glucosidase

• PDB DOI: https://doi.org/10.2210/pdb1S6Y/pdb

• Classification: HYDROLASE
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-01-28 Released: 2004-05-25 
• Deposition Author(s): Tereshko, V., Dementieva, I., Kim, Y., Collat, F., Joachimiak, A., Kossiakoff, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.31 Å
• R-Value Free: 
  0.251 (Depositor), 0.251 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.197 (Depositor) 

Literature

2.3A CRYSTAL STRUCTURE OF PHOSPHO-BETA-GLUCOSIDASE, licH Gene Product from BACILLUS STEAROTHERMOPHILUS

Tereshko, V., Dementieva, I., Kim, Y., Collat, F., Joachimiak, A., Kossiakoff, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 50.07 kDa 
• Atom Count: 3,372 
• Modeled Residue Count: 416 
• Deposited Residue Count: 450 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
6-phospho-beta-glucosidase	A	450	Geobacillus stearothermophilus	Mutation(s): 0  Gene Names: licH EC: 3.2.1.86
UniProt
Find proteins for P84135 (Geobacillus stearothermophilus) Explore P84135  Go to UniProtKB:  P84135

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.31 Å
• R-Value Free:  0.251 (Depositor), 0.251 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.197 (Depositor) 

Space Group: P 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.314	α = 90
b = 82.504	β = 90
c = 83.504	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-05-25 
Deposition Author(s): Tereshko, V., Dementieva, I., Kim, Y., Collat, F., Joachimiak, A., Kossiakoff, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2004-05-25
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary