1RV9 | pdb_00001rv9

Crystal Structure of Neisseria meningitidis protein NMB0706, Pfam DUF152

• PDB DOI: https://doi.org/10.2210/pdb1RV9/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Neisseria meningitidis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-12-13 Released: 2004-08-17 
• Deposition Author(s): Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.53 Å
• R-Value Free: 
  0.209 (Depositor) 
• R-Value Work: 
  0.197 (Depositor) 

Literature

Crystal Structure of a hypothetical protein, NMB0706

Eswaramoorthy, S., Swaminathan, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 27.25 kDa 
• Atom Count: 1,937 
• Modeled Residue Count: 242 
• Deposited Residue Count: 259 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
conserved hypothetical protein NMB0706	A	259	Neisseria meningitidis	Mutation(s): 0
UniProt
Find proteins for Q9K0A8 (Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)) Explore Q9K0A8  Go to UniProtKB:  Q9K0A8

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.53 Å
• R-Value Free:  0.209 (Depositor) 
• R-Value Work:  0.197 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.85	α = 90
b = 41.34	β = 99.34
c = 72.14	γ = 90

Software Package:

Software Name	Purpose
MARMAD	data collection
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement
MARMAD	data reduction
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-08-17 
Deposition Author(s): Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2004-08-17
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2011-11-16
  Changes: Atomic model
• Version 1.4: 2018-01-31
  Changes: Experimental preparation
• Version 1.5: 2021-02-03
  Changes: Derived calculations, Structure summary
• Version 1.6: 2024-02-14
  Changes: Data collection, Database references