1RIP | pdb_00001rip

RIBOSOMAL PROTEIN S17: CHARACTERIZATION OF THE THREE-DIMENSIONAL STRUCTURE BY 1H-AND 15N-NMR

• PDB DOI: https://doi.org/10.2210/pdb1RIP/pdb

• Classification: RIBOSOMAL PROTEIN
• Organism(s): Geobacillus stearothermophilus
• Mutation(s): No 


• Deposited: 1993-08-17 Released: 1993-10-31 
• Deposition Author(s): Golden, B.L., Hoffman, D.W., Ramakrishnan, V., White, S.W.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 6 

Literature

Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR.

Golden, B.L., Hoffman, D.W., Ramakrishnan, V., White, S.W.

(1993) Biochemistry 32: 12812-12820

• PubMed: 8251502 
• DOI: https://doi.org/10.1021/bi00210a033
• Primary Citation Related Structures: 
  1RIP


• PubMed Abstract: 
  

  The structure of ribosomal protein S17 from Bacillus stearothermophilus was investigated by two-dimensional homonuclear and heteronuclear magnetic resonance spectroscopy. The 1H and 15N chemical shift assignments are largely complete, and a preliminary structural characterization is presented. The protein consists of five beta-strands that form a single antiparallel beta-sheet with Greek-key topology. The beta-strands are connected by several extended loops, and two of these contain residue types that are frequently seen in the RNA-binding sites of proteins. Additionally, two point mutations that affect antibiotic resistance, translational fidelity, and ribosome assembly are located in these two regions of the protein. Since these potential RNA-binding sites are distributed over a large surface of the protein, it appears that the molecule may interact with several regions of 16S rRNA.

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Organizational Affiliation: 
• Department of Microbiology, Duke University Medical Center, Durham, North Carolina 27710.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 9.56 kDa 
• Atom Count: 671 
• Modeled Residue Count: 81 
• Deposited Residue Count: 81 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RIBOSOMAL PROTEIN S17	A	81	Geobacillus stearothermophilus	Mutation(s): 0
UniProt
Find proteins for P23828 (Geobacillus stearothermophilus) Explore P23828  Go to UniProtKB:  P23828

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 6 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1993-10-31 
Deposition Author(s): Golden, B.L., Hoffman, D.W., Ramakrishnan, V., White, S.W.

Revision History  

• Version 1.0: 1993-10-31
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations, Other
• Version 1.4: 2024-05-22
  Changes: Data collection