1PQS | pdb_00001pqs

Solution structure of the C-terminal OPCA domain of yCdc24p

• PDB DOI: https://doi.org/10.2210/pdb1PQS/pdb

• Classification: CELL CYCLE
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-06-19 Released: 2003-07-01 
• Deposition Author(s): Leitner, D., Wahl, M., Labudde, D., Diehl, A., Schmieder, P., Pires, J.R., Fossi, M., Leidert, M., Krause, G., Oschkinat, H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

The solution structure of an N-terminally truncated version of the yeast CDC24p PB1 domain shows a different beta-sheet topology.

Leitner, D., Wahl, M., Labudde, D., Krause, G., Diehl, A., Schmieder, P., Pires, J.R., Fossi, M., Wiedemann, U., Leidert, M., Oschkinat, H.

(2005) FEBS Lett 579: 3534-3538

• PubMed: 15961083 
• DOI: https://doi.org/10.1016/j.febslet.2005.05.025
• Primary Citation Related Structures: 
  1PQS


• PubMed Abstract: 
  

  Phox and Bem1 (PB1) domains mediate protein-protein interactions via the formation of homo- or hetero-dimers. The C-terminal PB1 domain of yeast cell division cycle 24 (CDC24p), a guanine-nucleotide exchange factor involved in cell polarity establishment, is known to interact with the PB1 domain occurring in bud emergence MSB1 interacting 1 (BEM1p) during the regulation of the yeast budding process via its OPR/PC/AID (OPCA) motif. Here, we present the structure of an N-terminally truncated version of the Sc CDC24p PB1 domain. It shows a different topology of the beta-sheet than the long form. However, the C-terminal part of the structure shows the conserved PB1 domain features including the OPCA motif with a slight rearrangement of helix alpha1. Residues which are important for the heterodimerization with BEM1p are structurally preserved.

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Organizational Affiliation: 
• Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Str. 10, 13125 Berlin, Germany. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 8.97 kDa 
• Atom Count: 632 
• Modeled Residue Count: 77 
• Deposited Residue Count: 77 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell division control protein 24	A	77	Saccharomyces cerevisiae	Mutation(s): 0  Gene Names: Cdc24p
UniProt
Find proteins for P11433 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P11433  Go to UniProtKB:  P11433

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-07-01 
Deposition Author(s): Leitner, D., Wahl, M., Labudde, D., Diehl, A., Schmieder, P., Pires, J.R., Fossi, M., Leidert, M., Krause, G., Oschkinat, H.

Revision History  

• Version 1.0: 2003-07-01
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection