1PMB | pdb_00001pmb

THE DETERMINATION OF THE CRYSTAL STRUCTURE OF RECOMBINANT PIG MYOGLOBIN BY MOLECULAR REPLACEMENT AND ITS REFINEMENT

• PDB DOI: https://doi.org/10.2210/pdb1PMB/pdb

• Classification: OXYGEN STORAGE
• Organism(s): Sus scrofa
• Mutation(s): No 


• Deposited: 1989-11-27 Released: 1990-01-15 
• Deposition Author(s): Smerdon, S.J., Oldfield, T.J., Dodson, E.J., Dodson, G.G., Hubbard, R.E., Wilkinson, A.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Observed: 
  0.185 (Depositor) 

Literature

Determination of the crystal structure of recombinant pig myoglobin by molecular replacement and its refinement.

Smerdon, S.J., Oldfield, T.J., Dodson, E.J., Dodson, G.G., Hubbard, R.E., Wilkinson, A.J.

(1990) Acta Crystallogr B 46: 370-377

• PubMed: 2383370 
• DOI: https://doi.org/10.1107/s0108768189012450
• Primary Citation Related Structures: 
  1PMB


• PubMed Abstract: 
  

  As part of a protein engineering study, the X-ray crystal structure of recombinant pig myoglobin, prepared and crystallized from E. coli, has been determined. Diffraction data were collected to 2.5 A spacing using a synchrotron X-ray source. The structure was solved using the molecular-replacement method and refined using least-squares minimization procedures to a crystallographic R factor of 18.5% using 14,481 reflections between 10 and 2.5 A. A preliminary comparison of the structure of pig myoglobin with other myoglobin structures is presented.

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Organizational Affiliation: 
• Department of Chemistry, University of York, Heslington, England.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 35.2 kDa 
• Atom Count: 2,537 
• Modeled Residue Count: 306 
• Deposited Residue Count: 306 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MYOGLOBIN	A, B	153	Sus scrofa	Mutation(s): 0  EC: 1.11.1 (UniProt), 1.7 (UniProt)
UniProt
Find proteins for P02189 (Sus scrofa) Explore P02189  Go to UniProtKB:  P02189

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	C [auth A], D [auth B]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Observed: 0.185 (Depositor) 

Space Group: I 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 124.91	α = 90
b = 42.63	β = 92.16
c = 92.2	γ = 90

Software Package:

Software Name	Purpose
PROLSQ	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 1990-01-15 
Deposition Author(s): Smerdon, S.J., Oldfield, T.J., Dodson, E.J., Dodson, G.G., Hubbard, R.E., Wilkinson, A.J.

Revision History  

• Version 1.0: 1990-01-15
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references, Derived calculations, Other