1OGW | pdb_00001ogw

Synthetic Ubiquitin with fluoro-Leu at 50 and 67

PDB DOI: https://doi.org/10.2210/pdb1OGW/pdb

Classification: CELL CYCLE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2003-05-13 Released: 2003-05-30
Deposition Author(s): Alexeev, D., Ramage, R., Young, D.W., Sawyer, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.32 Å
R-Value Work:
0.338 (DCC)
R-Value Observed:
0.222 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 1OGW

This is version 1.3 of the entry. See complete history.

Literature

Synthesis, Structural and Biological Studies of Ubiquitin Mutants Containing (2S, 4S)-5-Fluoroleucine Residues Strategically Placed in the Hydrophobic Core

Alexeev, D., Barlow, P.N., Bury, S.M., Charrier, J.-D., Cooper, A., Hadfield, D., Jamieson, C., Kelly, S.M., Layfield, R., Mayer, R.J., Mcsparran, H., Price, N.C., Ramage, R., Sawyer, L., Starkmann, B.A., Uhrin, D., Willken, J., Young, D.W.

(2003) Chembiochem 4: 894

PubMed: 12964166 Search on PubMed
DOI: https://doi.org/10.1002/cbic.200300699
Primary Citation Related Structures:
1OGW

Organizational Affiliation

Institute of Cell Molecular Biology (ICMB), University of Edinburgh, Michael Swann Building, Mayfield Road, Edinburgh EH9 3RJ, Scotland, UK.

Macromolecule Content

Total Structure Weight: 8.61 kDa
Atom Count: 733
Modeled Residue Count: 76
Deposited Residue Count: 76
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UBIQUITIN	A	76	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48 Go to UniProtKB: P0CG48
PHAROS: P0CG48 GTEx: ENSG00000150991
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CG48
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
LEF Query on LEF	A	L-PEPTIDE LINKING	C₆ H₁₂ F N O₂		LEU

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.32 Å
R-Value Work: 0.338 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.84	α = 90
b = 42.77	β = 90
c = 28.95	γ = 90

Software Package:

Software Name	Purpose
SHELXL-97	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHELXL-97	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-05-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-05-30
Type: Initial release
Version 1.1: 2011-12-07
Changes: Database references, Derived calculations, Other, Refinement description, Structure summary, Version format compliance
Version 1.2: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
Version 1.3: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.