1OG6 | pdb_00001og6

ydhF, an aldo-keto reductase from E.coli complexed with NADPH

PDB DOI: https://doi.org/10.2210/pdb1OG6/pdb

Classification: OXIDOREDUCTASE
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2003-04-24 Released: 2003-05-29
Deposition Author(s): Jeudy, S., Abergel, C., Claverie, J.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.238 (Depositor)
R-Value Work:
0.207 (Depositor)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1OG6

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Ydhf, an Aldo-Keto Reductase from Escherichia Coli

Jeudy, S., Abergel, C., Claverie, J.M.

To be published.

Macromolecule Content

Total Structure Weight: 103.18 kDa
Atom Count: 7,423
Modeled Residue Count: 890
Deposited Residue Count: 894
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL OXIDOREDUCTASE YDHF	A, B, C	298	Escherichia coli K-12	Mutation(s): 0 EC: 1
UniProt
Find proteins for P76187 (Escherichia coli (strain K12)) Explore P76187 Go to UniProtKB: P76187
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P76187
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP Query on NAP Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain E [auth B] SDF format, chain D [auth A] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] MOL2 format, chain D [auth A] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B] mmCIF format, chain D [auth A]	D [auth A], E [auth B], F [auth C]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain D [auth A] Focus chain E [auth B] Focus chain F [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.238 (Depositor)
R-Value Work: 0.207 (Depositor)
R-Value Observed: 0.207 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 174.529	α = 90
b = 174.529	β = 90
c = 97.923	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2003-05-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-05-29
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.