1OG0 | pdb_00001og0

CRYSTAL STRUCTURE OF THE MUTANT G226S OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PHENYLALANINE AND MANGANESE

PDB DOI: https://doi.org/10.2210/pdb1OG0/pdb

Classification: LYASE
Organism(s): Saccharomyces cerevisiae
Expression System: Saccharomyces cerevisiae
Mutation(s): Yes

Deposited: 2003-04-22 Released: 2004-04-30
Deposition Author(s): Koenig, V., Pfeil, A., Heinrich, G., Braus, G.H., Schneider, T.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.255 (Depositor)
R-Value Work:
0.213 (Depositor)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.6 of the entry. See complete history.

Literature

Crystal Structure of the Mutant G226S of the Tyrosine-Regulated 3-Deoxy-D-Arabino-Heptulosonate -7-Phosphate Synthase from Saccharomyces Cerevisiae Complexed with Phenylalanine and Manganese

Koenig, V., Pfeil, A., Heinrich, G., Braus, G.H., Schneider, T.R.

To be published.

Macromolecule Content

Total Structure Weight: 320.21 kDa
Atom Count: 20,830
Modeled Residue Count: 2,758
Deposited Residue Count: 2,960
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited	A, B, C, D, E A, B, C, D, E, F, G, H	370	Saccharomyces cerevisiae	Mutation(s): 1 Gene Names: ARO4, YBR249C, YBR1701 EC: 2.5.1.54
UniProt
Find proteins for P32449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32449 Go to UniProtKB: P32449
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32449
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PHE Query on PHE Download:Ideal Coordinates CCD File SDF format, chain M [auth C] SDF format, chain O [auth D] SDF format, chain U [auth G] SDF format, chain W [auth H] SDF format, chain S [auth F] SDF format, chain Q [auth E] SDF format, chain J [auth A] MOL2 format, chain M [auth C] MOL2 format, chain O [auth D] MOL2 format, chain U [auth G] MOL2 format, chain W [auth H] MOL2 format, chain S [auth F] MOL2 format, chain Q [auth E] MOL2 format, chain J [auth A] mmCIF format, chain M [auth C] mmCIF format, chain O [auth D] mmCIF format, chain U [auth G] mmCIF format, chain W [auth H] mmCIF format, chain S [auth F] mmCIF format, chain Q [auth E] mmCIF format, chain J [auth A]	J [auth A] M [auth C] O [auth D] Q [auth E] S [auth F] J [auth A], M [auth C], O [auth D], Q [auth E], S [auth F], U [auth G], W [auth H]	PHENYLALANINE C₉ H₁₁ N O₂ COLNVLDHVKWLRT-QMMMGPOBSA-N		Interactions Focus chain J [auth A] Focus chain M [auth C] Focus chain O [auth D] Focus chain Q [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain W [auth H]
MN Query on MN Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain R [auth F] SDF format, chain T [auth G] SDF format, chain V [auth H] SDF format, chain P [auth E] SDF format, chain N [auth D] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain R [auth F] MOL2 format, chain T [auth G] MOL2 format, chain V [auth H] MOL2 format, chain P [auth E] MOL2 format, chain N [auth D] mmCIF format, chain I [auth A] mmCIF format, chain K [auth B] mmCIF format, chain L [auth C] mmCIF format, chain R [auth F] mmCIF format, chain T [auth G] mmCIF format, chain V [auth H] mmCIF format, chain P [auth E] mmCIF format, chain N [auth D]	I [auth A] K [auth B] L [auth C] N [auth D] P [auth E] I [auth A], K [auth B], L [auth C], N [auth D], P [auth E], R [auth F], T [auth G], V [auth H]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain N [auth D] Focus chain P [auth E] Focus chain R [auth F] Focus chain T [auth G] Focus chain V [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.255 (Depositor)
R-Value Work: 0.213 (Depositor)
R-Value Observed: 0.213 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.154	α = 65.39
b = 93.971	β = 85.77
c = 104.843	γ = 75.52

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
EPMR	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-04-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-04-30
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2018-09-19
Changes: Data collection, Database references, Source and taxonomy, Structure summary
Version 1.4: 2019-07-10
Changes: Data collection
Version 1.5: 2019-07-24
Changes: Data collection
Version 1.6: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Other, Refinement description