1NRW | pdb_00001nrw

The structure of a HALOACID DEHALOGENASE-LIKE HYDROLASE FROM B. SUBTILIS

• PDB DOI: https://doi.org/10.2210/pdb1NRW/pdb

• Classification: HYDROLASE
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2003-01-25 Released: 2003-07-29 
• Deposition Author(s): Cuff, M.E., Kim, Y., Zhang, R., Joachimiak, A., Collart, F., Quartey, P., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.222 (Depositor), 0.227 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.200 (DCC) 

Literature

The structure of a HALOACID DEHALOGENASE-LIKE HYDROLASE FROM B. SUBTILIS

Cuff, M.E., Kim, Y., Zhang, R., Joachimiak, A., Collart, F., Quartey, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 32.78 kDa 
• Atom Count: 2,803 
• Modeled Residue Count: 285 
• Deposited Residue Count: 288 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein, haloacid dehalogenase-like hydrolase	A	288	Bacillus subtilis	Mutation(s): 6  Gene Names: YWPJ EC: 3.1.3
UniProt
Find proteins for P94592 (Bacillus subtilis (strain 168)) Explore P94592  Go to UniProtKB:  P94592

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	B [auth A], C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
CA	D [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.222 (Depositor), 0.227 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.200 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.116	α = 90
b = 68.423	β = 90
c = 95.032	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing
autoSHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-07-29 
Deposition Author(s): Cuff, M.E., Kim, Y., Zhang, R., Joachimiak, A., Collart, F., Quartey, P., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2003-07-29
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary