1NH1 | pdb_00001nh1

Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.275 (Depositor) 
  • R-Value Work: 
    0.222 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1NH1

This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae.

Lee, C.C.Wood, M.D.Ng, K.Luginbuhl, P.Spraggon, G.Katagiri, F.

(2004) Structure 12: 487-494

  • DOI: https://doi.org/10.1016/j.str.2004.02.013
  • Primary Citation Related Structures: 
    1NH1

  • PubMed Abstract: 

    AvrB is a Pseudomonas syringae type III effector protein that is translocated into host plant cells during attempted pathogenesis. Arabidopsis harboring the corresponding resistance protein RPM1 can detect AvrB and mount a rapid host defense response, thus avoiding active infection. In the plant cell, AvrB induces phosphorylation of RIN4, a key component in AvrB/RPM1 recognition. Although the AvrB/RPM1 system is among the best characterized of the numerous bacterial effector/plant resistance protein systems involved in plant disease resistance and pathogenesis, the details of the molecular recognition mechanism are still unclear. To gain further insights, the crystal structure of AvrB was determined. The 2.2 A structure exhibits a novel mixed alpha/beta bilobal fold. Aided by the structural information, we demonstrate that one lobe is the determinant of AvrB/RPM1 recognition specificity. This structural information and preliminary structure-function studies provide a framework for the future understanding of AvrB function on the molecular level.


  • Organizational Affiliation
    • Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, CA 92121, USA.

Macromolecule Content 

  • Total Structure Weight: 37.1 kDa 
  • Atom Count: 2,400 
  • Modeled Residue Count: 290 
  • Deposited Residue Count: 330 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Avirulence B protein330Pseudomonas syringaeMutation(s): 0 
Gene Names: AVRB
UniProt
Find proteins for P13835 (Pseudomonas savastanoi pv. glycinea)
Explore P13835 
Go to UniProtKB:  P13835
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13835
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.275 (Depositor) 
  • R-Value Work:  0.222 (Depositor) 
Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.028α = 90
b = 125.028β = 90
c = 63.246γ = 120
Software Package:
Software NamePurpose
CNSrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-09
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Data collection, Database references