1MJE | pdb_00001mje

STRUCTURE OF A BRCA2-DSS1-SSDNA COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 
    0.278 (Depositor) 
  • R-Value Work: 
    0.245 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1MJE

This is version 1.4 of the entry. See complete history

Literature

BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure.

Yang, H.Jeffrey, P.D.Miller, J.Kinnucan, E.Sun, Y.Thoma, N.H.Zheng, N.Chen, P.L.Lee, W.H.Pavletich, N.P.

(2002) Science 297: 1837-1848

  • DOI: https://doi.org/10.1126/science.297.5588.1837
  • Primary Citation Related Structures: 
    1IYJ, 1MIU, 1MJE

  • PubMed Abstract: 

    Mutations in the BRCA2 (breast cancer susceptibility gene 2) tumor suppressor lead to chromosomal instability due to defects in the repair of double-strand DNA breaks (DSBs) by homologous recombination, but BRCA2's role in this process has been unclear. Here, we present the 3.1 angstrom crystal structure of a approximately 90-kilodalton BRCA2 domain bound to DSS1, which reveals three oligonucleotide-binding (OB) folds and a helix-turn-helix (HTH) motif. We also (i) demonstrate that this BRCA2 domain binds single-stranded DNA, (ii) present its 3.5 angstrom structure bound to oligo(dT)9, (iii) provide data that implicate the HTH motif in dsDNA binding, and (iv) show that BRCA2 stimulates RAD51-mediated recombination in vitro. These findings establish that BRCA2 functions directly in homologous recombination and provide a structural and biochemical basis for understanding the loss of recombination-mediated DSB repair in BRCA2-associated cancers.


  • Organizational Affiliation
    • Department of Pharmacology, Sloan-Kettering Division, Joan and Sanford I. Weill Graduate School of Medical Sciences, Cornell University, New York, NY 10021, USA.

Macromolecule Content 

  • Total Structure Weight: 83.05 kDa 
  • Atom Count: 5,198 
  • Modeled Residue Count: 648 
  • Deposited Residue Count: 725 
  • Unique protein chains: 2
  • Unique nucleic acid chains: 1

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Deleted in split hand/split foot protein 170Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P60896 (Homo sapiens)
Explore P60896 
Go to UniProtKB:  P60896
PHAROS:  P60896
GTEx:  ENSG00000127922 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60896
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
breast cancer 2C [auth A]649Mus musculusMutation(s): 0 
UniProt
Find proteins for P97929 (Mus musculus)
Explore P97929 
Go to UniProtKB:  P97929
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP97929
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 1
MoleculeChains LengthOrganismImage
5'-D(P*TP*TP*TP*TP*TP*T)-3'A [auth C]6N/A
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free:  0.278 (Depositor) 
  • R-Value Work:  0.245 (Depositor) 
Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 198.866α = 90
b = 198.866β = 90
c = 200.047γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-09-27
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-08-09
    Changes: Advisory, Refinement description, Source and taxonomy
  • Version 1.4: 2024-02-14
    Changes: Advisory, Data collection, Database references