1LS8 | pdb_00001ls8

NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH

• PDB DOI: https://doi.org/10.2210/pdb1LS8/pdb
• BMRB: 6313
• BMRB: 4849

• Classification: TRANSPORT PROTEIN
• Organism(s): Bombyx mori
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2002-05-17 Released: 2002-11-20 
• Deposition Author(s): Lee, D., Damberger, F., Horst, R., Guntert, P., Leal, W.S., Wuthrich, K.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH

Lee, D., Damberger, F.F., Horst, R., Guntert, P., Nikonova, L., Leal, W.S., Wuthrich, K.

(2002) FEBS Lett 531: 314-318

• PubMed: 12417333 
• DOI: https://doi.org/10.1016/s0014-5793(02)03548-2
• Primary Citation Related Structures: 
  1LS8


• PubMed Abstract: 
  

  The nuclear magnetic resonance structure of the unliganded pheromone-binding protein (PBP) from Bombyx mori at pH above 6.5, BmPBP(B), consists of seven helices with residues 3-8, 16-22, 29-32, 46-59, 70-79, 84-100, and 107-124, and contains the three disulfide bridges 19-54, 50-108, and 97-117. This polypeptide fold encloses a large hydrophobic cavity, with a sufficient volume to accommodate the natural ligand bombykol. The polypeptide folds in free BmPBP(B) and in crystals of a BmPBP-bombykol complex are nearly identical, indicating that the B-form of BmPBP in solution represents the active conformation for ligand binding.

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Organizational Affiliation: 
• Institut für Molekularbiologie und Biophysik, Eidgenössische Technische Hochschule-Zürich, Zürich, Switzerland.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 15.9 kDa 
• Atom Count: 1,106 
• Modeled Residue Count: 142 
• Deposited Residue Count: 142 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
pheromone binding protein	A	142	Bombyx mori	Mutation(s): 0
UniProt
Find proteins for P34174 (Bombyx mori) Explore P34174  Go to UniProtKB:  P34174

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2002-11-20 
Deposition Author(s): Lee, D., Damberger, F., Horst, R., Guntert, P., Leal, W.S., Wuthrich, K.

Revision History  

• Version 1.0: 2002-11-20
  Type: Initial release
  
• Version 1.1: 2008-04-28
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-11-20
  Changes: Data collection, Structure summary