1L0O | pdb_00001l0o

Crystal Structure of the Bacillus stearothermophilus Anti-Sigma Factor SpoIIAB with the Sporulation Sigma Factor SigmaF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.279 (Depositor) 
  • R-Value Work: 
    0.221 (Depositor) 
  • R-Value Observed: 
    0.221 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the Bacillus stearothermophilus anti-sigma factor SpoIIAB with the sporulation sigma factor sigmaF.

Campbell, E.A.Masuda, S.Sun, J.L.Muzzin, O.Olson, C.A.Wang, S.Darst, S.A.

(2002) Cell 108: 795-807

  • DOI: https://doi.org/10.1016/s0092-8674(02)00662-1
  • Primary Citation Related Structures: 
    1L0O

  • PubMed Abstract: 

    Cell type-specific transcription during Bacillus sporulation is established by sigmaF. SpoIIAB is an anti-sigma that binds and negatively regulates sigmaF, as well as a serine kinase that phosphorylates and inactivates the anti-anti-sigma SpoIIAA. The crystal structure of sigmaF bound to the SpoIIAB dimer in the low-affinity, ADP form has been determined at 2.9 A resolution. SpoIIAB adopts the GHKL superfamily fold of ATPases and histidine kinases. A domain of sigmaF contacts both SpoIIAB monomers, while 80% of the sigma factor is disordered. The interaction occludes an RNA polymerase binding surface of sigmaF, explaining the SpoIIAB anti-sigma activity. The structure also explains the specificity of SpoIIAB for its target sigma factors and, in combination with genetic and biochemical data, provides insight into the mechanism of SpoIIAA anti-anti-sigma activity.


  • Organizational Affiliation
    • The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

Macromolecule Content 

  • Total Structure Weight: 62.37 kDa 
  • Atom Count: 2,736 
  • Modeled Residue Count: 339 
  • Deposited Residue Count: 543 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-sigma F factor
A, B
150Geobacillus stearothermophilusMutation(s): 0 
Gene Names: SpoIIAB
EC: 2.7.11.1
UniProt
Find proteins for O32727 (Geobacillus stearothermophilus)
Explore O32727 
Go to UniProtKB:  O32727
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO32727
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
sigma factor243Geobacillus stearothermophilusMutation(s): 1 
UniProt
Find proteins for O32728 (Geobacillus stearothermophilus)
Explore O32728 
Go to UniProtKB:  O32728
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO32728
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.279 (Depositor) 
  • R-Value Work:  0.221 (Depositor) 
  • R-Value Observed: 0.221 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.31α = 90
b = 97.31β = 90
c = 262.98γ = 120
Software Package:
Software NamePurpose
MLPHAREphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-04-03
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-10-27
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-02-14
    Changes: Data collection