1KSR | pdb_00001ksr

THE REPEATING SEGMENTS OF THE F-ACTIN CROSS-LINKING GELATION FACTOR (ABP-120) HAVE AN IMMUNOGLOBULIN FOLD, NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 45 
  • Conformers Submitted: 20 
  • Selection Criteria: NUMBER (0) OF RESIDUAL CONSTRAINS VIOLATION (THRESHOLDS: 0.45 A FOR NOES AND 10.0 DEGREE FOR ANGLES) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The repeating segments of the F-actin cross-linking gelation factor (ABP-120) have an immunoglobulin-like fold.

Fucini, P.Renner, C.Herberhold, C.Noegel, A.A.Holak, T.A.

(1997) Nat Struct Biol 4: 223-230

  • DOI: https://doi.org/10.1038/nsb0397-223
  • Primary Citation Related Structures: 
    1KSR

  • PubMed Abstract: 

    The 120,000 M(r) gelation factor and alpha-actinin are among the most abundant F-actin cross-linking proteins in Dictyostelium discoideum. Both molecules are rod-shaped homodimers. Each monomer chain is comprised of an actin-binding domain and a rod domain. The rod domain of the gelation factor consists of six 100-residue repetitive segments with high internal homology. We have now determined the three-dimensional structure of segment 4 of the rod domain of the gelation factor from D. discoideum using NMR spectroscopy. The segment consists of seven beta-sheets arranged in an immunoglobulin-like (Ig) fold. This is completely different from the alpha-actinin rod domain which consists of four spectrin-like alpha-helical segments. The gelation factor is the first example of an Ig-fold found in an actin-binding protein. Two highly homologous actin-binding proteins from human with similar sequences to the gelation factor, filamin and a 280,000 M(r) actin-binding protein (ABP-280), share conserved residues that form the core of the gelation factor repetitive segment structure. Thus, the segment 4 structure should be common to this subfamily of the spectrin superfamily. The structure of segment 4 together with previously published electron microscopy data, provide an explanation for the dimerization of the whole gelation factor molecule.


  • Organizational Affiliation
    • Max Planck Institute for Biochemistry, Martinsried, F.R.G.

Macromolecule Content 

  • Total Structure Weight: 10.52 kDa 
  • Atom Count: 740 
  • Modeled Residue Count: 100 
  • Deposited Residue Count: 100 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
GELATION FACTOR100Dictyostelium discoideumMutation(s): 0 
Gene Names: ABPC
UniProt
Find proteins for P13466 (Dictyostelium discoideum)
Explore P13466 
Go to UniProtKB:  P13466
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13466
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 45 
  • Conformers Submitted: 20 
  • Selection Criteria: NUMBER (0) OF RESIDUAL CONSTRAINS VIOLATION (THRESHOLDS: 0.45 A FOR NOES AND 10.0 DEGREE FOR ANGLES) 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-08-20
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Database references, Derived calculations, Other
  • Version 1.4: 2024-05-22
    Changes: Data collection