1JW1 | pdb_00001jw1

Crystallization and structure determination of goat lactoferrin at 4.0 resolution: A new form of packing in lactoferrins with a high solvent content in crystals

PDB DOI: https://doi.org/10.2210/pdb1JW1/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Capra hircus
Mutation(s): No

Deposited: 2001-09-02 Released: 2003-04-29
Deposition Author(s): Kumar, P., Yadav, S., Singh, T.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free:
0.328 (Depositor)
R-Value Work:
0.228 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystallization and structure determonation of goat lactoferrin at 4.0A resolution: A new form of packing in lactoferrins with a high solvent content in crystals

Kumar, P., Yadav, S., Singh, T.P.

(2002) Indian J Biochem Biophys 39: 16-21

Macromolecule Content

Total Structure Weight: 75.73 kDa
Atom Count: 5,295
Modeled Residue Count: 689
Deposited Residue Count: 689
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LACTOFERRIN	A	689	Capra hircus	Mutation(s): 0 EC: 3.4.21
UniProt
Find proteins for Q29477 (Capra hircus) Explore Q29477 Go to UniProtKB: Q29477
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q29477
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free: 0.328 (Depositor)
R-Value Work: 0.228 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.6	α = 90
b = 153.8	β = 90
c = 155.05	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-04-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-04-29
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.