1JJS | pdb_00001jjs

NMR Structure of IBiD, A Domain of CBP/p300


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 12 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

A small domain of CBP/p300 binds diverse proteins: solution structure and functional studies.

Lin, C.H.Hare, B.J.Wagner, G.Harrison, S.C.Maniatis, T.Fraenkel, E.

(2001) Mol Cell 8: 581-590

  • DOI: https://doi.org/10.1016/s1097-2765(01)00333-1
  • Primary Citation Related Structures: 
    1JJS

  • PubMed Abstract: 

    The transcriptional coactivators CBP and p300 are critical regulators of metazoan gene expression. They associate with many different DNA-bound transcription factors through small, conserved domains. We have identified a compactly folded 46 residue domain in CBP and p300, the IRF-3 binding domain (IBiD), and we have determined its structure by NMR. It has a helical framework containing an apparently flexible polyglutamine loop that participates in ligand binding. Spectroscopic data indicate that induced folding accompanies association of IBiD with its partners, which exhibit no evident sequence similarities. We demonstrate the significance both in vitro and in vivo of interactions between IBiD and a number of diverse partners. Thus, IBiD is an important contributor to signal integration by CBP and p300.


  • Organizational Affiliation
    • Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

Macromolecule Content 

  • Total Structure Weight: 5.58 kDa 
  • Atom Count: 328 
  • Modeled Residue Count: 42 
  • Deposited Residue Count: 50 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CREB-BINDING PROTEIN50Mus musculusMutation(s): 0 
Gene Names: CBP
EC: 2.3.1 (UniProt), 2.3.1.48 (UniProt)
UniProt
Find proteins for P45481 (Mus musculus)
Explore P45481 
Go to UniProtKB:  P45481
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP45481
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 12 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-10-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-23
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection