1J3M | pdb_00001j3m

Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb1J3M/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-02-05 Released: 2004-05-18
Deposition Author(s): Kishishita, S., Terada, T., Shirouzu, M., Kuramitsu, S., Park, S.-Y., Tame, R.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.259 (Depositor)
R-Value Work:
0.194 (Depositor)
R-Value Observed:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1J3M

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8

Kishishita, S., Tatsuguchi, A., Ushikoshi-Nakayama, R., Terada, T., Kuramitsu, S., Park, S.-Y., Tame, J.R., Shirouzu, M., Yokoyama, S.

(2004) Proteins 57: 883-887

PubMed: 15481054 Search on PubMed
DOI: https://doi.org/10.1002/prot.20282
Primary Citation Related Structures:
1J3M

Organizational Affiliation

RIKEN Genomic Sciences Center, Yokohama, Japan.

Macromolecule Content

Total Structure Weight: 28.03 kDa
Atom Count: 2,040
Modeled Residue Count: 254
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
the conserved hypothetical protein TT1751	A, B	129	Thermus thermophilus	Mutation(s): 0
UniProt
Find proteins for Q84BQ8 (Thermus thermophilus) Explore Q84BQ8 Go to UniProtKB: Q84BQ8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q84BQ8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO3 Query on SO3 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFITE ION O₃ S LSNNMFCWUKXFEE-UHFFFAOYSA-L		Interactions Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.259 (Depositor)
R-Value Work: 0.194 (Depositor)
R-Value Observed: 0.197 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.603	α = 90
b = 78.811	β = 116.64
c = 44.688	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-05-18

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-05-18
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.