1IRR | pdb_00001irr

Solution structure of paralytic peptide of the silkworm, Bombyx mori

• PDB DOI: https://doi.org/10.2210/pdb1IRR/pdb
• BMRB: 5188

• Classification: CYTOKINE
• Organism(s): Bombyx mori
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2001-10-23 Released: 2003-02-11 
• Deposition Author(s): Miura, K., Kamimura, M., Aizawa, T., Kiuchi, M., Hayakawa, Y., Mizuguchi, M., Kawano, K.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of paralytic peptide of silkworm, Bombyx mori

Miura, K., Kamimura, M., Aizawa, T., Kiuchi, M., Hayakawa, Y., Mizuguchi, M., Kawano, K.

(2002) Peptides 23: 2111-2116

• PubMed: 12535689 
• DOI: https://doi.org/10.1016/s0196-9781(02)00254-1
• Primary Citation Related Structures: 
  1IRR


• PubMed Abstract: 
  

  Paralytic peptide of Bombyx mori (BmPP) is one of the multifunctional ENF-peptides; the name of "ENF" is the consensus N-terminal amino acid sequence of the family peptides. We revealed that BmPP significantly possesses growth-blocking activity and plasmatocyte-spreading activity and that its activity profiles are different from those of another ENF-family peptide, namely, the growth-blocking peptide of Pseudaletia separata (PsGBP). We also determined the NMR structures of BmPP and PsGBP under the same conditions, which revealed the structural differences of the first and second beta-turn regions between the two peptides. On the basis of our results, it can be considered that the tertiary structural difference in these peptides may cause their different profiles of growth-blocking activity.

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Organizational Affiliation: 
• Bio-oriented Technology Research Advancement Institution, 1-40-2 Nisshin, Saitama, Saitama 331-8537, Japan.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 2.47 kDa 
• Atom Count: 172 
• Modeled Residue Count: 23 
• Deposited Residue Count: 23 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
paralytic peptide	A	23	N/A	Mutation(s): 0  Membrane Entity: Yes
UniProt
Find proteins for Q95YI2 (Bombyx mori) Explore Q95YI2  Go to UniProtKB:  Q95YI2

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-02-11 
Deposition Author(s): Miura, K., Kamimura, M., Aizawa, T., Kiuchi, M., Hayakawa, Y., Mizuguchi, M., Kawano, K.

Revision History  

• Version 1.0: 2003-02-11
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Database references, Derived calculations
• Version 1.4: 2023-12-27
  Changes: Data collection
• Version 1.5: 2024-10-30
  Changes: Structure summary