1I30 | pdb_00001i30

E. Coli Enoyl Reductase +NAD+SB385826

• PDB DOI: https://doi.org/10.2210/pdb1I30/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Escherichia coli
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2001-02-12 Released: 2002-02-12 
• Deposition Author(s): Seefeld, M.A., Miller, W.H., Payne, D.J., Janson, C.A., Qiu, X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.277 (Depositor) 
• R-Value Work: 
  0.209 (Depositor) 

Literature

Inhibitors of bacterial enoyl acyl carrier protein reductase (FabI): 2,9-disubstituted 1,2,3,4-tetrahydropyrido[3,4-b]indoles as potential antibacterial agents.

Seefeld, M.A., Miller, W.H., Newlander, K.A., Burgess, W.J., Payne, D.J., Rittenhouse, S.F., Moore, T.D., DeWolf, W.E., Keller, P.M., Qiu, X., Janson, C.A., Vaidya, K., Fosberry, A.P., Smyth, M.G., Jaworski, D.D., Slater-Radosti, C., Huffman, W.F.

(2001) Bioorg Med Chem Lett 11: 2241-2244

• PubMed: 11527706 
• DOI: https://doi.org/10.1016/s0960-894x(01)00405-x
• Primary Citation Related Structures: 
  1I30


• PubMed Abstract: 
  

  An SAR study of a screening lead has led to the identification of 2,9-disubstituted 1,2,3,4-tetrahydropyrido[3,4-b]indoles as inhibitors of Staphylococcus aureus enoyl acyl carrier protein reductase (FabI).

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Organizational Affiliation: 
• GlaxoSmithKline Pharmaceuticals, Antimicrobial and Host Defense Division, 1250 S. Collegeville Road, Collegeville, PA 19426, USA. [e-mail]

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 57.91 kDa 
• Atom Count: 4,121 
• Modeled Residue Count: 496 
• Deposited Residue Count: 524 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]	A, B	262	Escherichia coli	Mutation(s): 0  EC: 1.3.1.9
UniProt
Find proteins for P0AEK4 (Escherichia coli (strain K12)) Explore P0AEK4  Go to UniProtKB:  P0AEK4

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	C [auth A], E [auth B]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
826	D [auth A], F [auth B]	1,3,4,9-TETRAHYDRO-2-(HYDROXYBENZOYL)-9-[(4-HYDROXYPHENYL)METHYL]-6-METHOXY-2H-PYRIDO[3,4-B]INDOLE C25 H22 N2 O3 ADXYEWMDAGIULV-UHFFFAOYSA-N

Binding Affinity Annotations
ID	Source	Binding Affinity
826	BindingDB:  1I30	IC50: 4200 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.277 (Depositor) 
• R-Value Work:  0.209 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.49	α = 90
b = 79.49	β = 90
c = 325.83	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2002-02-12 
Deposition Author(s): Seefeld, M.A., Miller, W.H., Payne, D.J., Janson, C.A., Qiu, X.

Revision History  

• Version 1.0: 2002-02-12
  Type: Initial release
  
• Version 1.1: 2007-10-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2024-02-07
  Changes: Data collection, Database references, Derived calculations