1GA3

NMR STRUCTURE OF INTERLEUKIN-13


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 2.2 of the entry. See complete history


Literature

Solution structure of interleukin-13 and insights into receptor engagement

Eisenmesser, E.Z.Horita, D.A.Altieri, A.S.Byrd, R.A.

(2001) J Mol Biol 310: 231-241

  • DOI: https://doi.org/10.1006/jmbi.2001.4765
  • Primary Citation of Related Structures:  
    1GA3

  • PubMed Abstract: 

    The complex and interrelated function of the interleukin cytokines relies on a range of pro-inflammatory and anti-inflammatory immune responses mediated by an array of receptors, and there is considerable cross-reactivity for related cytokines. Recent findings continue to elucidate the expression patterns of interleukin receptors associated with a range of diseases, including cancer. We report here the first experimentally determined high-resolution structure of human interleukin-13 (IL-13). The experimental structure is significantly different from an earlier homology model, which could have led to improper estimation of receptor interaction surfaces and design of mutational experiments. Similarities between the presented IL-13 structure and the homologous interleukin-4 (IL-4) are discussed. Additionally, mutation data for IL-4 and IL-13 are analyzed and combined with a detailed structural analysis of the IL-4/IL4Ralpha interface that leads us to postulate interactions at the IL-13/receptor interface. The structural comparison is used to interpret the different affinities for various receptors and establishes the basis for further mutational experiments and antagonist design.


  • Organizational Affiliation

    Macromolecular NMR Section Structural Biophysics Laboratory, National Cancer Institute-Frederick, Frederick, MD 21702-1201, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-13113Homo sapiensMutation(s): 0 
Gene Names: IL13NC30
UniProt & NIH Common Fund Data Resources
Find proteins for P35225 (Homo sapiens)
Explore P35225 
Go to UniProtKB:  P35225
PHAROS:  P35225
GTEx:  ENSG00000169194 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35225
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-07-04
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-12-25
    Changes: Database references, Derived calculations, Other
  • Version 2.0: 2020-02-26
    Type: Coordinate replacement
    Reason: Model orientation/position
    Changes: Atomic model, Data collection, Database references, Derived calculations, Experimental preparation, Other, Refinement description, Source and taxonomy, Structure summary
  • Version 2.1: 2023-06-14
    Changes: Database references, Other
  • Version 2.2: 2024-11-20
    Changes: Data collection, Database references, Structure summary