1G3I | pdb_00001g3i

CRYSTAL STRUCTURE OF THE HSLUV PROTEASE-CHAPERONE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.41 Å
  • R-Value Free: 
    0.284 (Depositor) 
  • R-Value Work: 
    0.240 (Depositor) 
  • R-Value Observed: 
    0.240 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Crystal and solution structures of an HslUV protease-chaperone complex.

Sousa, M.C.Trame, C.B.Tsuruta, H.Wilbanks, S.M.Reddy, V.S.McKay, D.B.

(2000) Cell 103: 633-643

  • DOI: https://doi.org/10.1016/s0092-8674(00)00166-5
  • Primary Citation Related Structures: 
    1G3I, 1G3K

  • PubMed Abstract: 

    HslUV is a "prokaryotic proteasome" composed of the HslV protease and the HslU ATPase, a chaperone of the Clp/Hsp100 family. The 3.4 A crystal structure of an HslUV complex is presented here. Two hexameric ATP binding rings of HslU bind intimately to opposite sides of the HslV protease; the HslU "intermediate domains" extend outward from the complex. The solution structure of HslUV, derived from small angle X-ray scattering data under conditions where the complex is assembled and active, agrees with this crystallographic structure. When the complex forms, the carboxy-terminal helices of HslU distend and bind between subunits of HslV, and the apical helices of HslV shift substantially, transmitting a conformational change to the active site region of the protease.


  • Organizational Affiliation
    • Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.

Macromolecule Content 

  • Total Structure Weight: 826.23 kDa 
  • Atom Count: 45,528 
  • Modeled Residue Count: 5,919 
  • Deposited Residue Count: 7,416 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-DEPENDENT HSLU PROTEASE ATP-BINDING SUBUNIT HSLU
A, B, C, D, E
A, B, C, D, E, F, S, T, U, V, W, X
444Haemophilus influenzaeMutation(s): 0 
UniProt
Find proteins for P43773 (Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd))
Explore P43773 
Go to UniProtKB:  P43773
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43773
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-DEPENDENT PROTEASE HSLV
G, H, I, J, K
G, H, I, J, K, L, M, N, O, P, Q, R
174Haemophilus influenzaeMutation(s): 0 
EC: 3.4.99 (PDB Primary Data), 3.4.25.2 (UniProt)
UniProt
Find proteins for P43772 (Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd))
Explore P43772 
Go to UniProtKB:  P43772
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43772
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP

Query on ATP



Download:Ideal Coordinates CCD File
AA [auth C]
BA [auth D]
CA [auth E]
DA [auth F]
EA [auth S]
AA [auth C],
BA [auth D],
CA [auth E],
DA [auth F],
EA [auth S],
FA [auth T],
GA [auth U],
HA [auth V],
IA [auth W],
JA [auth X],
Y [auth A],
Z [auth B]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.41 Å
  • R-Value Free:  0.284 (Depositor) 
  • R-Value Work:  0.240 (Depositor) 
  • R-Value Observed: 0.240 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 209.223α = 90
b = 220.579β = 90
c = 241.07γ = 90
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-11-22
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references, Derived calculations
  • Version 1.4: 2024-04-03
    Changes: Refinement description