1FC5 | pdb_00001fc5

CRYSTAL STRUCTURE OF MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.297 (Depositor) 
  • R-Value Work: 
    0.253 (Depositor), 0.231 (DCC) 
  • R-Value Observed: 
    0.260 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history

Literature

The crystal structure of Escherichia coli MoeA, a protein from the molybdopterin synthesis pathway.

Schrag, J.D.Huang, W.Sivaraman, J.Smith, C.Plamondon, J.Larocque, R.Matte, A.Cygler, M.

(2001) J Mol Biology 310: 419-431

  • DOI: https://doi.org/10.1006/jmbi.2001.4771
  • Primary Citation Related Structures: 
    1FC5

  • PubMed Abstract: 

    MoeA is involved in synthesis of the molybdopterin cofactor, although its function is not yet clearly defined. The three-dimensional structure of the Escherichia coli protein was solved at 2.2 A resolution. The locations of highly conserved residues among the prokaryotic and eukaryotic MoeA homologs identifies a cleft in the dimer interface as the likely functional site. Of the four domains of MoeA, domain 2 displays a novel fold and domains 1 and 4 each have only one known structural homolog. Domain 3, in contrast, is structurally similar to many other proteins. The protein that resembles domain 3 most closely is MogA, another protein required for molybdopterin cofactor synthesis. The overall similarity between MoeA and MogA, and the similarities in a constellation of residues that are strongly conserved in MoeA, suggests that these proteins bind similar ligands or substrates and may have similar functions.


  • Organizational Affiliation
    • Biotechnology Research Institute, National Research Council of Canada, 6100 Royalmount Avenue, Montreal, PQ, Canada. joe@bri.nrc.ca

Macromolecule Content 

  • Total Structure Weight: 89.01 kDa 
  • Atom Count: 6,589 
  • Modeled Residue Count: 807 
  • Deposited Residue Count: 822 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN
A, B
411Escherichia coliMutation(s): 8 
EC: 2.10.1.1
UniProt
Find proteins for P12281 (Escherichia coli (strain K12))
Explore P12281 
Go to UniProtKB:  P12281
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12281
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.297 (Depositor) 
  • R-Value Work:  0.253 (Depositor), 0.231 (DCC) 
  • R-Value Observed: 0.260 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.64α = 90
b = 101.85β = 90
c = 103.44γ = 90
Software Package:
Software NamePurpose
SOLVEphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-07-25
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2018-01-31
    Changes: Advisory, Atomic model, Experimental preparation
  • Version 2.1: 2024-10-16
    Changes: Data collection, Database references, Derived calculations, Structure summary