1F2J | pdb_00001f2j

CRYSTAL STRUCTURE ANALYSIS OF ALDOLASE FROM T. BRUCEI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 
    0.293 (Depositor) 
  • R-Value Work: 
    0.199 (Depositor) 
  • R-Value Observed: 
    0.199 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Structures of type 2 peroxisomal targeting signals in two trypanosomatid aldolases.

Chudzik, D.M.Michels, P.A.de Walque, S.Hol, W.G.

(2000) J Mol Biology 300: 697-707

  • DOI: https://doi.org/10.1006/jmbi.2000.3910
  • Primary Citation Related Structures: 
    1EPX, 1F2J

  • PubMed Abstract: 

    Trypanosomatids, unicellular organisms responsible for several global diseases, contain unique organelles called glycosomes in which the first seven glycolytic enzymes are sequestered. We report the crystal structures of glycosomal fructose-1,6-bisphosphate aldolase from two major tropical pathogens, Trypanosoma brucei and Leishmania mexicana, the causative agents of African sleeping sickness and one form of leishmaniasis, respectively. Unlike mammalian aldolases, the T. brucei and L. mexicana aldolases contain nonameric N-terminal type 2 peroxisomal targeting signals (PTS2s) to direct their import into the glycosome. In both tetrameric trypanosomatid aldolases, the PTS2s from two different subunits form two closely intertwined structures. These "PTS2 dimers", which have very similar conformations in the two aldolase structures, are the first reported conformations of a glycosomal or peroxisomal PTS2, and provide opportunities for the design of trypanocidal compounds.


  • Organizational Affiliation
    • Departments of Biological Structure and Biochemistry Biomolecular Structure Center, University of Washington, Seattle, WA, 98195-7742, USA.

Macromolecule Content 

  • Total Structure Weight: 40.94 kDa 
  • Atom Count: 2,948 
  • Modeled Residue Count: 357 
  • Deposited Residue Count: 370 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FRUCTOSE-BISPHOSPHATE ALDOLASE, GLYCOSOMAL370Trypanosoma bruceiMutation(s): 0 
EC: 4.1.2.13
UniProt
Find proteins for P07752 (Trypanosoma brucei brucei)
Explore P07752 
Go to UniProtKB:  P07752
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP07752
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free:  0.293 (Depositor) 
  • R-Value Work:  0.199 (Depositor) 
  • R-Value Observed: 0.199 (Depositor) 
Space Group: I 4 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 209.66α = 90
b = 209.66β = 90
c = 209.66γ = 90
Software Package:
Software NamePurpose
AMoREphasing
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-07-13
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2018-06-06
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.4: 2023-08-09
    Changes: Data collection, Database references, Refinement description