1EIA | pdb_00001eia

X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 
    0.275 (Depositor), 0.283 (DCC) 
  • R-Value Work: 
    0.227 (Depositor), 0.233 (DCC) 
  • R-Value Observed: 
    0.227 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Model for lentivirus capsid core assembly based on crystal dimers of EIAV p26.

Jin, Z.Jin, L.Peterson, D.L.Lawson, C.L.

(1999) J Mol Biology 286: 83-93

  • DOI: https://doi.org/10.1006/jmbi.1998.2443
  • Primary Citation Related Structures: 
    1EIA, 2EIA

  • PubMed Abstract: 

    Two crystal forms of recombinant p26 capsid protein (CA) from the equine infectious anemia virus (EIAV) have in common an antiparallel four-helix bundle dimer interface between N-terminal domains (NTDs). The dimer interface provides a lenient scaffold to accommodate the wide sequence variation in these helices within lentivirus CA. Pairs of dimers weakly associate to form exact or approximate D2 symmetry tetramers. In one of the two crystal forms, the tetramers are linked via dimerization of C-terminal domains (CTDs). We propose that the observed NTD and CTD homodimer interactions are involved in the assembly of the lentivirus capsid. The NTD homodimer shape readily suggests a model for the mature capsid core, based on hexagonal packing with dimensions and surface topology resembling described EIAV capsid cores. Combining available data for human immunodeficiency virus and EIAV CA, we also propose an assembly pathway for maturation of the lentivirus capsid core following proteolytic cleavage of the gag polyprotein precursor.


  • Organizational Affiliation
    • Biology Department, Brookhaven National Laboratory, Upton, NY, 11973, USA.

Macromolecule Content 

  • Total Structure Weight: 23.49 kDa 
  • Atom Count: 1,800 
  • Modeled Residue Count: 207 
  • Deposited Residue Count: 207 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
EIAV CAPSID PROTEIN P26207Equine infectious anemia virusMutation(s): 0 
Gene Names: GAG
UniProt
Find proteins for P69732 (Equine infectious anemia virus (strain Wyoming))
Explore P69732 
Go to UniProtKB:  P69732
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP69732
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free:  0.275 (Depositor), 0.283 (DCC) 
  • R-Value Work:  0.227 (Depositor), 0.233 (DCC) 
  • R-Value Observed: 0.227 (Depositor) 
Space Group: I 4 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 176.76α = 90
b = 176.76β = 90
c = 176.76γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
PHASESphasing
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-02-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-10-09
    Changes: Data collection, Database references, Structure summary