1CMB

THREE DIMENSIONAL CRYSTAL STRUCTURES OF ESCHERICHIA COLI MET REPRESSOR WITH AND WITHOUT COREPRESSOR

• PDB DOI: https://doi.org/10.2210/pdb1CMB/pdb

• Classification: DNA-BINDING REGULATORY PROTEIN
• Organism(s): Escherichia coli
• Mutation(s): No 


• Deposited: 1992-08-28 Released: 1993-10-31 
• Deposition Author(s): Rafferty, J.B., Phillips, K., Phillips, S.E.V.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Observed: 0.186 

Literature

Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor.

Rafferty, J.B., Somers, W.S., Saint-Girons, I., Phillips, S.E.

(1989) Nature 341: 705-710

• PubMed: 2677753 
• DOI: https://doi.org/10.1038/341705a0
• Primary Citation of Related Structures:  
  1CMB, 1CMC


• PubMed Abstract: 
  

  The three-dimensional crystal structure of met repressor, in the presence or absence of bound corepressor (S-adenosylmethionine), shows a dimer of intertwined monomers, which do not have the helix-turn-helix motif characteristic of other bacterial repressor and activator structures. We propose that the interaction of met repressor with DNA occurs through either a pair of symmetry-related alpha-helices or a pair of beta-strands, and suggest a model for binding of several dimers to met operator regions.

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Organizational Affiliation: 

Astbury Department of Biophysics, University of Leeds, UK.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 24.15 kDa 
• Atom Count: 1,783 
• Modelled Residue Count: 208 
• Deposited Residue Count: 208 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MET APO-REPRESSOR	A, B	104	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0A8U6 (Escherichia coli (strain K12)) Explore P0A8U6  Go to UniProtKB:  P0A8U6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Observed: 0.186 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.6	α = 90
b = 62.6	β = 102.4
c = 44.5	γ = 90

Software Package:

Software Name	Purpose
PROLSQ	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 1993-10-31 
Deposition Author(s): Rafferty, J.B., Phillips, K., Phillips, S.E.V.

Revision History  

• Version 1.0: 1993-10-31
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-11-29
  Changes: Derived calculations, Other
• Version 1.4: 2024-02-07
  Changes: Data collection, Database references, Derived calculations