1CKI | pdb_00001cki

RECOMBINANT CASEIN KINASE I DELTA TRUNCATION MUTANT CONTAINING RESIDUES 1-317


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.279 (Depositor), 0.260 (DCC) 
  • R-Value Work: 
    0.193 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 
    0.193 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1CKI

This is version 1.3 of the entry. See complete history

Literature

Three-dimensional structure of mammalian casein kinase I: molecular basis for phosphate recognition.

Longenecker, K.L.Roach, P.J.Hurley, T.D.

(1996) J Mol Biology 257: 618-631

  • DOI: https://doi.org/10.1006/jmbi.1996.0189
  • Primary Citation Related Structures: 
    1CKI, 1CKJ

  • PubMed Abstract: 

    The three-dimensional structure for the catalytic region of the mammalian protein kinase, casein kinase I delta (CKI delta), has been solved by X-ray crystallography to a resolution of 2.3 A. A truncation mutant of CKI delta lacking the C-terminal autoinhibitory region was expressed in Escherichia coli, purified, and crystallized. The structure was solved by molecular replacement using the crystal structure of the catalytic domain of a CKI homolog from Schizosaccharomyces pombe, Cki1. A tungstate derivative confirmed the initial molecular replacement solution and identified an anion binding site which may contribute to the unique substrate specificity of CKI. Like other protein kinases, the catalytic domain of CKI is composed of two lobes with a cleft between them for binding ATP. Comparison of the mammalian and yeast CKI structures suggests that a rotation of the N-terminal domain occurs upon ATP binding. This domain motion is similar, but not identical, to that observed in cAMP-dependent protein kinase upon binding ATP. Although Cki1 has many similarities to CKI delta over the catalytic domain, these two forms of CKI likely perform different functions in vivo. Relating the primary sequences of other CKI enzymes to the three-dimensional architecture of CKI delta reveals a catalytic face that is especially conserved among the subset of CKI family members associated with the regulation of DNA repair.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, 46202, USA.

Macromolecule Content 

  • Total Structure Weight: 73.99 kDa 
  • Atom Count: 4,823 
  • Modeled Residue Count: 578 
  • Deposited Residue Count: 634 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CASEIN KINASE I DELTA
A, B
317Rattus norvegicusMutation(s): 0 
Gene Names: T7
EC: 2.7.1 (PDB Primary Data), 2.7.11.1 (UniProt), 2.7.11.26 (UniProt)
UniProt
Find proteins for Q06486 (Rattus norvegicus)
Explore Q06486 
Go to UniProtKB:  Q06486
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06486
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.279 (Depositor), 0.260 (DCC) 
  • R-Value Work:  0.193 (Depositor), 0.180 (DCC) 
  • R-Value Observed: 0.193 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.84α = 90
b = 115.47β = 90
c = 60.6γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
R-AXISdata reduction
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1995-12-07
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-07
    Changes: Data collection, Database references, Other