1BC5 | pdb_00001bc5

CHEMOTAXIS RECEPTOR RECOGNITION BY PROTEIN METHYLTRANSFERASE CHER


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 
    0.288 (Depositor) 
  • R-Value Work: 
    0.204 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 
    0.204 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history

Literature

Chemotaxis receptor recognition by protein methyltransferase CheR.

Djordjevic, S.Stock, A.M.

(1998) Nat Struct Biol 5: 446-450

  • DOI: https://doi.org/10.1038/nsb0698-446
  • Primary Citation Related Structures: 
    1BC5

  • PubMed Abstract: 

    Signal transduction processes commonly involve reversible covalent modifications of receptors. Bacterial chemotaxis receptors are reversibly methylated at specific glutamate residues within coiled-coil regions of their cytoplasmic domains. Methylation is catalyzed by an S-adenosylmethionine-dependent protein methyltransferase, CheR, that binds to a specific sequence at the C-termini of some chemotaxis receptors. From this tethering point, CheR methylates neighboring receptor molecules. We report the crystal structure, determined to 2.2 A resolution, of a complex of the Salmonella typhimurium methyltransferase CheR bound to the methylation reaction product, S-adenosylhomocysteine (AdoHcy), and the C-terminal pentapeptide of the aspartate receptor, Tar. The structure indicates the basis for the specificity of interaction between the chemoreceptors and CheR and identifies a specific receptor binding motif incorporated in the CheR methyltransferase domain.


  • Organizational Affiliation
    • Howard Hughes Medical Institute, Center for Advanced Biotechnology and Medicine, and Department of Biochemistry, University of Medicine and Dentistry of New Jersey, Piscataway 08854-5638, USA.

Macromolecule Content 

  • Total Structure Weight: 32.16 kDa 
  • Atom Count: 2,387 
  • Modeled Residue Count: 275 
  • Deposited Residue Count: 275 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CHEMOTAXIS RECEPTOR METHYLTRANSFERASE269Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
EC: 2.1.1.80
UniProt
Find proteins for P07801 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P07801 
Go to UniProtKB:  P07801
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP07801
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
CHEMOTAXIS RECEPTORB [auth T]6N/AMutation(s): 0 

Small Molecules

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free:  0.288 (Depositor) 
  • R-Value Work:  0.204 (Depositor), 0.196 (DCC) 
  • R-Value Observed: 0.204 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.91α = 90
b = 70.58β = 90
c = 72.79γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
CCP4data scaling
X-PLORphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-11-25
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-02
    Changes: Database references, Derived calculations, Other, Refinement description
  • Version 1.4: 2024-11-06
    Changes: Data collection, Structure summary