1AX9 | pdb_00001ax9

ACETYLCHOLINESTERASE COMPLEXED WITH EDROPHONIUM, LAUE DATA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 
    0.268 (Depositor), 0.248 (DCC) 
  • R-Value Work: 
    0.196 (DCC) 
  • R-Value Observed: 
    0.207 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.5 of the entry. See complete history

Literature

Static Laue diffraction studies on acetylcholinesterase.

Ravelli, R.B.Raves, M.L.Ren, Z.Bourgeois, D.Roth, M.Kroon, J.Silman, I.Sussman, J.L.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1359-1366

  • DOI: https://doi.org/10.1107/s0907444998005277
  • Primary Citation Related Structures: 
    1AX9, 2ACK

  • PubMed Abstract: 

    Acetylcholinesterase (AChE) is one of nature's fastest enzymes, despite the fact that its three-dimensional structure reveals its active site to be deeply sequestered within the molecule. This raises questions with respect to traffic of substrate to, and products from, the active site, which may be investigated by time-resolved crystallography. In order to address one aspect of the feasibility of performing time-resolved studies on AChE, a data set has been collected using the Laue technique on a trigonal crystal of Torpedo californica AChE soaked with the reversible inhibitor edrophonium, using a total X-ray exposure time of 24 ms. Electron-density maps obtained from the Laue data, which are of surprisingly good quality compared with similar maps from monochromatic data, show essentially the same features. They clearly reveal the bound ligand, as well as a structural change in the conformation of the active-site Ser200 induced upon binding.


  • Organizational Affiliation
    • Department of Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.

Macromolecule Content 

  • Total Structure Weight: 60.9 kDa 
  • Atom Count: 4,308 
  • Modeled Residue Count: 527 
  • Deposited Residue Count: 537 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ACETYLCHOLINESTERASE537Tetronarce californicaMutation(s): 0 
EC: 3.1.1.7
UniProt
Find proteins for P04058 (Tetronarce californica)
Explore P04058 
Go to UniProtKB:  P04058
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04058
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
EDR

Query on EDR



Download:Ideal Coordinates CCD File
B [auth A]EDROPHONIUM ION
C10 H16 N O
VWLHWLSRQJQWRG-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free:  0.268 (Depositor), 0.248 (DCC) 
  • R-Value Work:  0.196 (DCC) 
  • R-Value Observed: 0.207 (Depositor) 
Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113α = 90
b = 113β = 90
c = 136.9γ = 120
Software Package:
Software NamePurpose
LaueViewdata collection
LaueViewdata reduction
REFMACrefinement
LaueViewdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-02-11
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-06-02
    Changes: Data collection, Derived calculations, Refinement description
  • Version 1.4: 2023-08-02
    Changes: Database references, Refinement description
  • Version 1.5: 2024-10-30
    Changes: Data collection, Structure summary