1AIP | pdb_00001aip

EF-TU EF-TS COMPLEX FROM THERMUS THERMOPHILUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.289 (Depositor), 0.288 (DCC) 
  • R-Value Work: 
    0.216 (Depositor), 0.229 (DCC) 
  • R-Value Observed: 
    0.216 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the EF-Tu.EF-Ts complex from Thermus thermophilus.

Wang, Y.Jiang, Y.Meyering-Voss, M.Sprinzl, M.Sigler, P.B.

(1997) Nat Struct Biol 4: 650-656

  • DOI: https://doi.org/10.1038/nsb0897-650
  • Primary Citation Related Structures: 
    1AIP

  • PubMed Abstract: 

    In order to study nucleotide exchange mechanisms in GTP-binding proteins, we have determined the crystal structure of the complex formed by the elongation factor Tu (EF-Tu) and its exchange factor Ts (EF-Ts) from Thermus thermophilus. The complex is a dyad symmetrical heterotetramer in which each EF-Tu, through a bipartite interface, interacts with two subunits of EF-Ts, explaining the need for a dimeric exchange factor. The architecture of the assembly is distinctly different from that of the corresponding heterodimeric E. coli complex, in which the monomeric E. coli EF-Ts remarkably forms essentially the same bipartite interface with EF-Tu through a sequence/structural repeat. GDP is released primarily by a Ts-induced peptide flip in the nucleotide binding pocket that disrupts hydrogen bonds to the phosphates and repositions the peptide carbonyl so as to sterically and electrostatically eject the GDP. The exchange mechanism may have useful implications for receptor-induced exchange in heterotrimeric G proteins.


  • Organizational Affiliation
    • Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06511, USA.

Macromolecule Content 

  • Total Structure Weight: 268.76 kDa 
  • Atom Count: 17,575 
  • Modeled Residue Count: 2,269 
  • Deposited Residue Count: 2,404 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ELONGATION FACTOR TU
A, B, E, F
405Thermus thermophilusMutation(s): 0 
EC: 3.6.5.3
UniProt
Find proteins for P60338 (Thermus thermophilus)
Explore P60338 
Go to UniProtKB:  P60338
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60338
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
ELONGATION FACTOR TS
C, D, G, H
196Thermus thermophilusMutation(s): 0 
UniProt
Find proteins for P43895 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore P43895 
Go to UniProtKB:  P43895
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP43895
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.289 (Depositor), 0.288 (DCC) 
  • R-Value Work:  0.216 (Depositor), 0.229 (DCC) 
  • R-Value Observed: 0.216 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.3α = 90
b = 127.5β = 90.3
c = 123.7γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-10-22
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Structure summary