1AH7 | pdb_00001ah7

PHOSPHOLIPASE C FROM BACILLUS CEREUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 
    0.231 (Depositor) 
  • R-Value Work: 
    0.203 (Depositor) 
  • R-Value Observed: 
    0.203 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1AH7

This is version 1.5 of the entry. See complete history

Literature

High-resolution (1.5 A) crystal structure of phospholipase C from Bacillus cereus.

Hough, E.Hansen, L.K.Birknes, B.Jynge, K.Hansen, S.Hordvik, A.Little, C.Dodson, E.Derewenda, Z.

(1989) Nature 338: 357-360

  • DOI: https://doi.org/10.1038/338357a0
  • Primary Citation Related Structures: 
    1AH7

  • PubMed Abstract: 

    Both the phosphatidylinositol-hydrolysing and the phosphatidylcholine-hydrolysing phospholipases C have been implicated in the generation of second messengers in mammalian cells. The phosphatidylcholine-hydrolysing phospholipase C (PLC) from Bacillus cereus, a monomeric protein containing 245 amino-acid residues, is similar to some of the corresponding mammalian proteins. This, together with the fact that the bacterial enzyme can mimic the action of mammalian PLC in causing, for example, enhanced prostaglandin biosynthesis, suggests that B. cereus PLC can be used as a model for the hitherto poorly characterized mammalian PLCs. We report here the three-dimensional structure of B. cereus PLC at 1.5 A resolution. The enzyme is an all-helix protein belonging to a novel structural class and contains, at least in the crystalline state, three Zn2+ in the active site. We also present preliminary results from a study at 1.9 A resolution of the complex between PLC and inorganic phosphate (Pi) which indicate that the substrate binds directly to the metal ions.


  • Organizational Affiliation
    • Department of Chemistry, University of Tromsø, Norway.

Macromolecule Content 

  • Total Structure Weight: 28.62 kDa 
  • Atom Count: 2,267 
  • Modeled Residue Count: 245 
  • Deposited Residue Count: 245 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PHOSPHOLIPASE C245Bacillus cereusMutation(s): 0 
EC: 3.1.4.3
UniProt
Find proteins for P09598 (Bacillus cereus)
Explore P09598 
Go to UniProtKB:  P09598
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09598
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free:  0.231 (Depositor) 
  • R-Value Work:  0.203 (Depositor) 
  • R-Value Observed: 0.203 (Depositor) 
Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.76α = 90
b = 89.76β = 90
c = 74.03γ = 90
Software Package:
Software NamePurpose
CCP4model building
REFMACrefinement
CCP4data reduction
CCP4data scaling
CCP4phasing

Structure Validation

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Entry History 

Deposition Data

  • Released Date: 1997-12-10 
  • Deposition Author(s): Greaves, R.

Revision History  (Full details and data files)

  • Version 1.0: 1997-12-10
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Advisory, Derived calculations, Other
  • Version 1.4: 2018-04-18
    Changes: Data collection
  • Version 1.5: 2024-02-07
    Changes: Advisory, Data collection, Database references, Derived calculations