13DJ | pdb_000013dj

HAdV-C5 hexon trimer

PDB DOI: https://doi.org/10.2210/pdb13DJ/pdb
EM Map EMD-76991: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Human adenovirus 5
Mutation(s): No

Deposited: 2026-04-30 Released: 2026-07-08
Deposition Author(s): Ma, O.X., Reddy, V.S.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 13DJ

This is version 1.0 of the entry. See complete history.

Literature

Structural requirements of blood factors binding to soluble hexon trimers with implications for adenovirus cell targeting and immune evasion

Ma, O.X., Reddy, V.S.

To be published.

Macromolecule Content

Total Structure Weight: 324.32 kDa
Atom Count: 22,005
Modeled Residue Count: 2,745
Deposited Residue Count: 2,856
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hexon protein	A, B, C	952	Human adenovirus 5	Mutation(s): 0
UniProt
Find proteins for P04133 (Human adenovirus C serotype 5) Explore P04133 Go to UniProtKB: P04133
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P04133
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207
RECONSTRUCTION	cryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-07-08

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	AI161367

Revision History (Full details and data files)

Version 1.0: 2026-07-08
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.